Sequence
atgc intronic sequence ATGC exonic sequence...cacaattgattattgaccttcatgttttgtatttccataatttattttgcattttacttgaatttaacatatatgcatcactaatcattgtttttttcagACACCAACACATGTTTGTCTCATAACAGACTTTTGTCCTGGAGGAGAATTATTTGCACTACTCGATATGCAACCAATGAAACTTTTCAGAGAAGAATCTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G032351_T01 (Zea mays), 3'ss of exon 13
lower sequence: LOC_Os04g23890.3 (Oryza sativa), 3'ss of exon 14
-cacaattgattattgaccttcatgttttgtatttccataatttattttgcattttacttgaatttaacatatatgcatcactaatcattgtttttttcagACACCAACACATGTTTGTCTCATAACAGACTTTTGTCCTGGAGGAGAATTATTTGCACTACTCGATATGCAACCAATGAAACTTTTCAGAGAAGAATCTG
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acatcagagagtagtttttgtattaacttccatactagtttttcattatccagctaatttaaaaaccaca-aggttctttactaatgttgtctattttcagACGCCAACACATGTTTGTCTCATAACAGACTTTTGTCCGGGAGGAGAACTCTTTGCAGTGCTTGATAGGCAACCCATGAAAATTTTCAGGGAAGAATGTG
upper sequence: GRMZM2G032351_T01 (Zea mays), 3'ss of exon 13
lower sequence: GLYMA16G19560.1 (Glycine max), 3'ss of exon 16
-cacaattgattattgaccttcatgttttgtatttccataatttattttgcatttt-acttgaatttaacatatatgcatcactaatcattgtttttttcagACACCAACACATGTTTGTCTCATAACAGACTTTTGTCCTGGAGGAGAATTATTTGCACTACTCGATATGCAACCAATGAAACTTTTCAGAGAAGAATCTG
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tgatcctcccacgtggacat--gaatcgcaaattttaatgattagggctccccactgagttgcctgttagcagtttttttgatagtttctttatctcaacagACTCCTACACATGTATGTTTGATTACTGACTTCTTTCCTGGAGGAGAGTTGTTTGCATTGCTTGACAAGCAACCAATGAAGATTTTCAAAGAAGAATCAG
upper sequence: GRMZM2G032351_T01 (Zea mays), 3'ss of exon 13
lower sequence: Vv03s0038g04210.t01 (Vitis vinifera), 3'ss of exon 14
-cacaattgattattgaccttcatgttttgtatttccataatttat--tttgcattttacttgaatttaacatatatgcatcactaatcattgtttttttcagACACCAACACATGTTTGTCTCATAACAGACTTTTGTCCTGGAGGAGAATTATTTGCACTACTCGATATGCAACCAATGAAACTTTTCAGAGAAGAATCTG
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atatccttttctattttttttttcaattt-ttcttttataatttacaattagtaattcacc-aaatacaat-caggtatactgatgtccctctatcttctcagACTCCTACACACGTTTGTTTGATAACAGACTTTTTCCCTGGTGGAGAGTTATTTGCCCTGCTTGACAAGCAACCCATGAAAATATTTAGAGAGGAATCTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71434885|gb|DR815935.1|DR815935EST: TCACTATTGGATCATCCTTTTCTCCCCAACAT-ATATACTTCATTTCAAG ACACCAACACATGTTTGT
genomic: TCACTATTGGATCATCCTTTTCTCCC-AACATTATATACTTCATTCCA-Ggtcagtctta ... tttttttcagACACCAACACATGTTTGT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttgcattttacttgaatttaacatatatgcatcactaatcattgtttttttcagACACCAACACATGTTTGTCTCATAACAGACTTTTGTCCTGGAGGAGAATTATTTGCACTACTCGATATGCAACCAATGAAACTTTTCAGAGAAGAATCTG
cactaat putative branch site (score: 2)
tcattgtttttttc CT-rich tract
attttacttgaattta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cacaattgattattgaccttcatgttttgtatttccataatttattttgcattttacttgaatttaacatatatgcatcactaatcattgtttttttcagACACCAACACATGTTTGTCTCATAACAGACTTTTGTCCTGGAGGAGAATTATTTGCACTACTCGATATGCAACCAATGAAACTTTTCAGAGAAGAATCTG
- - - - - - - - -cttcatg
- - - - - - - - - - - - - -tgtattt
- - - - - - - - - - - - - - - - - - - - - - - - - - -ttacttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgcatc