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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcaactctgacagaagtcataactcataagcaaatctgaaaaacaagtgacatcttctaatctgagGTTTGGTTATTTCAGAGGAAATGAAGGAGATGAGGTTGAGTGCACGTTTGAGCAACTGTTCATCAAATGGGGTTTCACGACTCATGTCCATTGGCAGCAA

Basic information

species Zea mays
transcript GRMZM2G029506_T01
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G029506_T01 (Zea mays), 3'ss of exon 13
lower sequence: LOC_Os06g36090.1 (Oryza sativa), 3'ss of exon 9
gtaagcaactctgacagaagtcataactcataagcaaatctgaaaaacaagtgacatcttctaatctgagGTTTGGT--------TATTTCAGAGGAAATGAAGGAGATGAGGTTGAGTGCACGTTTGAGCAACTGTTCATCAAATGGGGTTTCACGACTCATGTCCATTGGCAGCAA---------------
           | | | |      || ||||||  ||||||||||||   | ||  | ||  || ||||||  |  |        ||||||||| ||||||| ||||||||| |||||||| ||| |||||||  ||||||| ||||| ||||||||||| ||||||||||| |||||               
----------gtaagaaactcttcaagtcataattaaatctgaaaaaattg-gaagtttttaaaactgaggaataataaggcaattatttcagAAGAAATGAGGGAGATGAGATTGAGTGCTCGTCTGAGCAATAGTTCATCGAATGGAGTTTCACGACTGATGTCCATTGGTAGCAATGAAGCTGGTCCAAG

upper sequence: GRMZM2G029506_T01 (Zea mays), 3'ss of exon 13
lower sequence: LOC_Os06g36090.2 (Oryza sativa), 3'ss of exon 9
gtaagcaactctgacagaagtcataactcataagcaaatctgaaaaacaagtgacatcttctaatctgagGTTTGGT--------TATTTCAGAGGAAATGAAGGAGATGAGGTTGAGTGCACGTTTGAGCAACTGTTCATCAAATGGGGTTTCACGACTCATGTCCATTGGCAGCAA------------------
           | | | |      || ||||||  ||||||||||||   | ||  | ||  || ||||||  |  |        ||||||||| ||||||| ||||||||| |||||||| ||| |||||||  ||||||| ||||| ||||||||||| ||||||||||| |||||                  
----------gtaagaaactcttcaagtcataattaaatctgaaaaaattg-gaagtttttaaaactgaggaataataaggcaattatttcagaagAAATGAGGGAGATGAGATTGAGTGCTCGTCTGAGCAATAGTTCATCGAATGGAGTTTCACGACTGATGTCCATTGGTAGCAATGAAGCTGGTCCAAGAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agaagtcataactcataagcaaatctgaaaaacaagtgacatcttctaatctgagGTTTGGTTATTTCAGAGGAAATGAAGGAGATGAGGTTGAGTGCACGTTTGAGCAACTGTTCATCAAATGGGGTTTCACGACTCATGTCCATTGGCAGCAA
                                           ttctaat  putative branch site (score: 2)
                                       catcttct  CT-rich tract
                           aaaaacaa  TA-rich tract