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gtaaagcttaatcaactatagttttgttgtttgagaaaaaacaaaactatagttttgtttgttgtggaatgtctgaaccttatgttcactgtttcatctgctgcagCTGAACAATGTTGCCAGCCTGTGGTTCATGTCACTTTTTATCTGCATTTTTGCTACAAGCATCCTAGAAATGAGATGGAGTGGTGTTGGGATTGATGATT
species | Zea mays |
transcript | GRMZM2G028353_T01 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: GTACATTGCCTGCCATCTGTTTATTGACGGGGAAATTTATCACTCCAGAG CTGAACAATGTTGCCAGCCTGTGGTTCATGTCACTTTTTATCTGCATTTTTEST: gi|211228601|gb|FL093623.1|FL093623
genomic: GTACATTGCCTGCCATCTGTTTATTGACGGGGAAATTTATCACTCCAGAGgtaaagctta ... tctgctgcagCTGAACAATGTTGCCAGCCTGTGGTTCATGTCACTTTTTATCTGCATTTTT
EST: GTACATTGCCTGCCATCTGTTTATTGACAGGGAAATTTATCACTCCAGAG CTGAATAATGTTGCCAGCCTGTGGTTCATGTCACTTTTTATCEST: gi|211230655|gb|FL093626.1|FL093626
genomic: GTACATTGCCTGCCATCTGTTTATTGACGGGGAAATTTATCACTCCAGAGgtaaagctta ... tctgctgcagCTGAACAATGTTGCCAGCCTGTGGTTCATGTCACTTTTTATC
EST: GTACATTGCCTGCCATCTGTTTATTGACGGGGAAATTTATCACTCCAGAG CTGAACAATGTTGCCAGCCTGTGGTTCATGTCACTTTTTATCTGCATTTTT
genomic: GTACATTGCCTGCCATCTGTTTATTGACGGGGAAATTTATCACTCCAGAGgtaaagctta ... tctgctgcagCTGAACAATGTTGCCAGCCTGTGGTTCATGTCACTTTTTATCTGCATTTTT
gttttgtttgttgtggaatgtctgaaccttatgttcactgtttcatctgctgcagCTGAACAATGTTGCCAGCCTGTGGTTCATGTCACTTTTTATCTGCATTTTTGCTACAAGCATCCTAGAAATGAGATGGAGTGGTGTTGGGATTGATGATT
tttcatct CT-rich tract
ttatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaagcttaatcaactatagttttgttgtttgagaaaaaacaaaactatagttttgtttgttgtggaatgtctgaaccttatgttcactgtttcatctgctgcagCTGAACAATGTTGCCAGCCTGTGGTTCATGTCACTTTTTATCTGCATTTTTGCTACAAGCATCCTAGAAATGAGATGGAGTGGTGTTGGGATTGATGATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA