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...tcgagatagtttcagcttcaaatgatgaccatttcatcttgtttctatttcggggtaatgcatgagatttttttttctgaacctgtcttccatggtgcagGAGAAATCTATCTCGCATTCTTCAATCTCGACTCCATGAGCAGGAAGATGACCGTTCAAATATCAGACCTTGGAAAGGTTCTCGGAAGAAACCTTTTGGA
species | Zea mays |
transcript | GRMZM2G028307_T02 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: GTACCAGTGGAGGTCGGGCATGGATTGCAACTGGAAGTGAAG GAGAAATCTATCTCGCGTTCTTCAATCTCGACTCCATGAGCAGGAAGATGAEST: gi|50328270|gb|CO523396.1|CO523396
genomic: GTACCAGTGGAGGTCGGGCATGGATTGCAACTGGAAGTGAAGgttagttatc ... catggtgcagGAGAAATCTATCTCGCATTCTTCAATCTCGACTCCATGAGCAGGAAGATGA
EST: GTACCAGTGGAGGTCGGGCATGGATTGCAACTGGAAGTGAAG GAGAAATCTATCTCGCATTCTTCAATCTCGACTCCATGAGCAGGAAGATGAEST: gi|74237283|gb|DT645197.1|DT645197
genomic: GTACCAGTGGAGGTCGGGCATGGATTGCAACTGGAAGTGAAGgttagttatc ... catggtgcagGAGAAATCTATCTCGCATTCTTCAATCTCGACTCCATGAGCAGGAAGATGA
EST: GTACCAGTGGAGGTCGGGCATGGATTGCAACTGGAAGTGAAG GAGAAATCTATCTCGCATTCTTCAATCTCGACTCCATGAGCAGGAAGATGAEST: gi|211028161|gb|FL322650.1|FL322650
genomic: GTACCAGTGGAGGTCGGGCATGGATTGCAACTGGAAGTGAAGgttagttatc ... catggtgcagGAGAAATCTATCTCGCATTCTTCAATCTCGACTCCATGAGCAGGAAGATGA
EST: GTACCAGTGGAGGTCGGGCATGGATTGCAACTGGAAGTGAAG GAGAAATCTATCTCGCGTTCTTCAATCTCGACTCCATGAGCAGGAAGATGAEST: gi|32934104|gb|CF038916.1|CF038916
genomic: GTACCAGTGGAGGTCGGGCATGGATTGCAACTGGAAGTGAAGgttagttatc ... catggtgcagGAGAAATCTATCTCGCATTCTTCAATCTCGACTCCATGAGCAGGAAGATGA
EST: ACCAGTGGAGGTCGGGCATGGATTGCAACTGGAAGTGAAG GAGAAATCTATCTCGCGTTCTTCAATCTCGACTCCATGAGCAGGAAGATGAEST: gi|211010841|gb|FL363378.1|FL363378
genomic: ACCAGTGGAGGTCGGGCATGGATTGCAACTGGAAGTGAAGgttagttatc ... catggtgcagGAGAAATCTATCTCGCATTCTTCAATCTCGACTCCATGAGCAGGAAGATGA
EST: GTACCAGTGGAGGTCGGGCATGGATTGCAACTGGAAGTGAAG GAGAAATCTATCTCGCGTTCTTCAATCTCGACTCCATGAGCAGGAAGATGAEST: gi|89760464|gb|DY688865.1|DY688865
genomic: GTACCAGTGGAGGTCGGGCATGGATTGCAACTGGAAGTGAAGgttagttatc ... catggtgcagGAGAAATCTATCTCGCATTCTTCAATCTCGACTCCATGAGCAGGAAGATGA
EST: GTACCAGTGGAGGTCGGGCATGGATTGCAACTGGAAGTGAAG GAGAAATCTATCTCGCATTCTTCAATCTCGACTCCATGAGCAGGAAGATGAEST: gi|211483893|gb|FL352028.1|FL352028
genomic: GTACCAGTGGAGGTCGGGCATGGATTGCAACTGGAAGTGAAGgttagttatc ... catggtgcagGAGAAATCTATCTCGCATTCTTCAATCTCGACTCCATGAGCAGGAAGATGA
EST: GTACCAGTGGAGGTCGGGCATGGATTGCAACTGGAAGTGAAG GAGAAATCTATCTCGCGTTCTTCAATCTCGACTCCATGAGCAGGAAGATGAEST: gi|32834923|gb|CD974601.1|CD974601
genomic: GTACCAGTGGAGGTCGGGCATGGATTGCAACTGGAAGTGAAGgttagttatc ... catggtgcagGAGAAATCTATCTCGCATTCTTCAATCTCGACTCCATGAGCAGGAAGATGA
EST: GTGGAGGTCGGGCATGGATTGCAACTGGAAGTGAAG GAGAAATCTATCTCGCGTTCTTCAATCTCGACTCCATGAGCAGGAAGATGA
genomic: GTGGAGGTCGGGCATGGATTGCAACTGGAAGTGAAGgttagttatc ... catggtgcagGAGAAATCTATCTCGCATTCTTCAATCTCGACTCCATGAGCAGGAAGATGA
tatttcggggtaatgcatgagatttttttttctgaacctgtcttccatggtgcagGAGAAATCTATCTCGCATTCTTCAATCTCGACTCCATGAGCAGGAAGATGACCGTTCAAATATCAGACCTTGGAAAGGTTCTCGGAAGAAACCTTTTGGA
cctgtcttcc CT-rich tract
atgagattttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcgagatagtttcagcttcaaatgatgaccatttcatcttgtttctatttcggggtaatgcatgagatttttttttctgaacctgtcttccatggtgcagGAGAAATCTATCTCGCATTCTTCAATCTCGACTCCATGAGCAGGAAGATGACCGTTCAAATATCAGACCTTGGAAAGGTTCTCGGAAGAAACCTTTTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - cagcttc
- - - - - - - - - - -atgatga
- - - - - - - - - - - - - - - - - - - -tgtttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaacctg