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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtttacttatacttcagttagcatgtattaatggaactccaaagagctgctttgttatctcttgctattgtggtaacactgattgttgtctttaaacaatgatagaatgttgcaaggtttatctgactttgttttgttttgcatctttctgcagGCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAATTTAGGGTACTAGATTGCGTTGCCTCAGGGCTAGTTTGGCCACCTCATTT

Basic information

species Zea mays
transcript GRMZM2G028096_T04
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17929792|gb|BM266752.1|BM266752
EST:     CGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGG                         GCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
genomic: CGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGGgtatgtttac ... ctttctgcagGCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
EST: gi|17929919|gb|BM266879.1|BM266879
EST:     CGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGG                         GCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
genomic: CGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGGgtatgtttac ... ctttctgcagGCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
EST: gi|31998127|gb|CD661940.1|CD661940
EST:     CGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGG                         GCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
genomic: CGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGGgtatgtttac ... ctttctgcagGCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
EST: gi|18163534|gb|BM333373.1|BM333373
EST:     CGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGG                         GCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
genomic: CGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGGgtatgtttac ... ctttctgcagGCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
EST: gi|9953649|gb|BE640232.1|BE640232
EST:     CGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGG                         GCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
genomic: CGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGGgtatgtttac ... ctttctgcagGCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
EST: gi|4646743|gb|AI621818.1|AI621818
EST:     CGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGG                         GCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
genomic: CGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGGgtatgtttac ... ctttctgcagGCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
EST: gi|71764555|gb|DR962492.1|DR962492
EST:     CGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGG                         GCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
genomic: CGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGGgtatgtttac ... ctttctgcagGCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
EST: gi|211378389|gb|FL229419.1|FL229419
EST:     ATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGG                         GCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
genomic: ATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGGgtatgtttac ... ctttctgcagGCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
EST: gi|211378356|gb|FL454976.1|FL454976
EST:     CGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGG                         GCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
genomic: CGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGGgtatgtttac ... ctttctgcagGCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
EST: gi|18174490|gb|BM349878.1|BM349878
EST:     CGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGG                         GCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
genomic: CGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGGgtatgtttac ... ctttctgcagGCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
EST: gi|17931777|gb|BM268737.1|BM268737
EST:     CGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGG                         GCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
genomic: CGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGGgtatgtttac ... ctttctgcagGCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
EST: gi|78023870|gb|DV492257.1|DV492257
EST:     CGCAGGTCATATTCACCAAGGGGAAGTTTTAGGGATTATGATCGATCTGG                         GCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
genomic: CGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGGgtatgtttac ... ctttctgcagGCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
EST: gi|74232159|gb|DT640073.1|DT640073
EST:     CGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGG                         GCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
genomic: CGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGGgtatgtttac ... ctttctgcagGCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
EST: gi|18167439|gb|BM337278.1|BM337278
EST:     CGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGG                         GCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
genomic: CGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGGgtatgtttac ... ctttctgcagGCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
EST: gi|18175669|gb|BM350898.1|BM350898
EST:     CGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGG                         GCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
genomic: CGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGGgtatgtttac ... ctttctgcagGCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
EST: gi|18167334|gb|BM337173.1|BM337173
EST:     CGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGG                         GCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
genomic: CGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGGgtatgtttac ... ctttctgcagGCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
EST: gi|6021894|gb|AW066822.1|AW066822
EST:     CGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGG                         GCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
genomic: CGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGGgtatgtttac ... ctttctgcagGCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
EST: gi|18166248|gb|BM336087.1|BM336087
EST:     CGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGG                         GCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
genomic: CGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGGgtatgtttac ... ctttctgcagGCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
EST: gi|60357771|gb|DN224744.1|DN224744
EST:     CGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGG                         GCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
genomic: CGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGGgtatgtttac ... ctttctgcagGCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
EST: gi|18164732|gb|BM334571.1|BM334571
EST:     CGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGG                         GCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
genomic: CGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGGgtatgtttac ... ctttctgcagGCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
EST: gi|16921243|gb|BM075055.1|BM075055
EST:     CGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGG                         GCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
genomic: CGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGGgtatgtttac ... ctttctgcagGCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
EST: gi|18167102|gb|BM336941.1|BM336941
EST:     CGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGG                         GCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
genomic: CGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGGgtatgtttac ... ctttctgcagGCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
EST: gi|18172104|gb|BM347492.1|BM347492
EST:     CGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGG                         GCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
genomic: CGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGGgtatgtttac ... ctttctgcagGCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
EST: gi|16921430|gb|BM075145.1|BM075145
EST:     CGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGG                         GCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
genomic: CGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGGgtatgtttac ... ctttctgcagGCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
EST: gi|18162156|gb|BM331995.1|BM331995
EST:     CGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGG                         GCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
genomic: CGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGGgtatgtttac ... ctttctgcagGCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
EST: gi|17931415|gb|BM268375.1|BM268375
EST:     CGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGG                         GCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
genomic: CGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGGgtatgtttac ... ctttctgcagGCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
EST: gi|18168036|gb|BM337876.1|BM337876
EST:     CGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGG                         GCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
genomic: CGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGGgtatgtttac ... ctttctgcagGCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
EST: gi|166703828|gb|EG203567.1|EG203567
EST:     GGTCATATTCACCAAGGGGAAGTTCAAGGGATTATGATCGATCTGG                         GCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
genomic: GGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGGgtatgtttac ... ctttctgcagGCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
EST: gi|18165701|gb|BM335540.1|BM335540
EST:     CGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGG                         GCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
genomic: CGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGGgtatgtttac ... ctttctgcagGCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
EST: gi|18166694|gb|BM336533.1|BM336533
EST:     CGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGG                         GCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
genomic: CGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGGgtatgtttac ... ctttctgcagGCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
EST: gi|18163210|gb|BM333049.1|BM333049
EST:     CGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGG                         GCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
genomic: CGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGGgtatgtttac ... ctttctgcagGCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
EST: gi|17932280|gb|BM269240.1|BM269240
EST:     CGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGG                         GCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
genomic: CGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGGgtatgtttac ... ctttctgcagGCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
EST: gi|5499217|gb|AI855084.1|AI855084
EST:     CGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGG                         GCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
genomic: CGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGGgtatgtttac ... ctttctgcagGCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
EST: gi|18170063|gb|BM339903.1|BM339903
EST:     CGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGG                         GCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
genomic: CGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGGgtatgtttac ... ctttctgcagGCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
EST: gi|29545137|gb|CB605315.1|CB605315
EST:     CGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGG                         GCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
genomic: CGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGGgtatgtttac ... ctttctgcagGCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
EST: gi|18171731|gb|BM341571.1|BM341571
EST:     CGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGG                         GCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
genomic: CGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGGgtatgtttac ... ctttctgcagGCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
EST: gi|18169111|gb|BM338951.1|BM338951
EST:     CGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGG                         GCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
genomic: CGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGGgtatgtttac ... ctttctgcagGCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
EST: gi|16921280|gb|BM075073.1|BM075073
EST:     CGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGG                         GCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
genomic: CGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGGgtatgtttac ... ctttctgcagGCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
EST: gi|17932384|gb|BM269344.1|BM269344
EST:     CGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGG                         GCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
genomic: CGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGGgtatgtttac ... ctttctgcagGCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
EST: gi|18175096|gb|BM350484.1|BM350484
EST:     CGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGG                         GCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
genomic: CGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGGgtatgtttac ... ctttctgcagGCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
EST: gi|28985625|gb|CB350734.1|CB350734
EST:     CGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGG                         GCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT
genomic: CGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGGgtatgtttac ... ctttctgcagGCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 123

AAAGAGAGAGAGATTCCAGGCAGTCTCGTAGTTATGATTCCAGAAGCCACCGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGGgtatgtttac ... ctttctgcagGCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAATTTAGGGTACTAGATTGCGTTGCCTCAGGGCTAGTTTGGCCACCTCATTT


Block sizes: 48 (upstream exon), 45 (downstream exon)
Score: 53

AAAGAGAGAGAGATTCCAGGCAGTCTCGTAGTTATGATTCCAGAAGCCACCGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGGgtatgtttac ... ctttctgcagGCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAATTTAGGGTACTAGATTGCGTTGCCTCAGGGCTAGTTTGGCCACCTCATTT


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 63

AAAGAGAGAGAGATTCCAGGCAGTCTCGTAGTTATGATTCCAGAAGCCACCGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGGgtatgtttac ... ctttctgcagGCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAATTTAGGGTACTAGATTGCGTTGCCTCAGGGCTAGTTTGGCCACCTCATTT


Block sizes: 48 (upstream exon), 47 (downstream exon)
Score: 44

AAAGAGAGAGAGATTCCAGGCAGTCTCGTAGTTATGATTCCAGAAGCCACCGCAGGTCATATTCACCAAGGGGAAGTTCTAGGGATTATGATCGATCTGGgtatgtttac ... ctttctgcagGCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAATTTAGGGTACTAGATTGCGTTGCCTCAGGGCTAGTTTGGCCACCTCATTT




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatagaatgttgcaaggtttatctgactttgttttgttttgcatctttctgcagGCGTCATGAACGCCGTGATCGGTACTAGGAGCAAGGAAGCCTCCTTGAAATTTAGGGTACTAGATTGCGTTGCCTCAGGGCTAGTTTGGCCACCTCATTT
                     atctgac  putative branch site (score: 44)
                                     ttttgcatctttct  putative PPT
                                ttttgtttt  TA-rich tract