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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ccctacttttcggatttactatttacacaatatatactacagtcgtttcttaccaacttccacaatctgaatgtttctgacattttgcaatgaccatcagGTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGCAGCAACACGGCCACCTCCGAGCCGTCCTCACCCAAGTCCCTGCACTCGC

Basic information

species Zea mays
transcript GRMZM2G027851_T01
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G027851_T02 (Zea mays), 3'ss of exon 12
lower sequence: LOC_Os07g47100.2 (Oryza sativa), 3'ss of exon 13
ccctacttttcggatttactatttacacaatatatactacag-tcgtttcttaccaacttccacaatc-tgaatgtttctgacattttgcaatgaccatcagGTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGCAGCAACACGGCCACCTCCGAGCCGTCCTCACCCAAGTCCCTGCACTCGC
   |  ||| ||   | | |  ||   ||  ||       || ||   | |    ||| || |   |  ||||   | |||||||||   ||||   || |||| |||||||||||||| |||||||||||| |||||||||| || ||||   || |  | | |||||| ||||| || ||||| ||||||||||| || |
--attgtttacgagctaaatccttgttcagaatccctggaagctcaaatgtgcaaaacatctatttttgtgaaacatactgacatttataaatgtttattagGTATTTGGGATGATGACAAAGCCATTGATCAGGCTGCTGCTACCGGCCTCAGGCCATCCTGTCACCTCTGAGCCTTCATCACCAAAGTCCCTGCATTCTC

upper sequence: GRMZM2G027851_T02 (Zea mays), 3'ss of exon 12
lower sequence: EFJ32893 (Selaginella moellendorffii), 3'ss of exon 12
ccctacttttcggatttactatttacacaatatatactacagtcgtttcttaccaacttccacaatctgaatgtttctgacattttgcaatgaccatcagGTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGCA-GCAACA-----CGGCCACCTCCGAGCCGTCCTCACCCAAGTCCCTGCACTCGC
                              ||   || ||| | |||| |   |   ||  |   | |   ||    ||  | |  | ||       ||||||||||| ||||| ||||||||||||||| ||  |||||| ||| |   || |  ||      | |     || |||||||| || || ||              
-----------------------------gtaagcac-acacttgtttttcttctttttttatgctttctctgagcttgcgagt--ggaacc-ttgccagGTGTTTGGAATGATAACGAAGCCATTGATCGGGTGGCTGCTGCCTCCACACATGAGACGTCCGGCAGTGGATTCAGAGCCGTCGTCCCCGAAAGAAGCAA------

upper sequence: GRMZM2G027851_T02 (Zea mays), 3'ss of exon 12
lower sequence: EFJ05720 (Selaginella moellendorffii), 3'ss of exon 12
ccctacttttcggatttactatttacacaatatatactacagtcgtttcttaccaacttccacaatctgaatgtttctgacattttgcaatgaccatcagGTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGCA-GCAACA-----CGGCCACCTCCGAGCCGTCCTCACCCAAGTCCCTGCACTCGC
                              ||   || ||| |  ||| |   |   ||  |   | |   ||    ||  | |  | ||       ||||||||||| ||||| ||||||||||||||| ||  |||||| ||| |   || |  ||      | |     || |||||||| || || ||              
-----------------------------gtaagcac-acacttatttttcttctttttttatgctttctctgagcttgcgagt--ggaacc-ttgccagGTGTTTGGAATGATAACGAAGCCATTGATCGGGTGGCTGCTGCCTCCACACATGAGACGTCCGGCAGTGGATTCAGAGCCGTCGTCCCCGAAAGAAGCAA------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|93281413|gb|EB673677.1|EB673677
EST:     ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATG                         GTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGC
genomic: ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATGgtgagtcgtc ... tgaccatcagGTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGC
EST: gi|50333104|gb|CO528230.1|CO528230
EST:     ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATG                         GTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGC
genomic: ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATGgtgagtcgtc ... tgaccatcagGTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGC
EST: gi|89755588|gb|DY685957.1|DY685957
EST:     ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATG                         GTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGC
genomic: ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATGgtgagtcgtc ... tgaccatcagGTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGC
EST: gi|93282180|gb|EB674444.1|EB674444
EST:     ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATG                         GTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGC
genomic: ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATGgtgagtcgtc ... tgaccatcagGTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGC
EST: gi|71437105|gb|DR818155.1|DR818155
EST:     ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATG                         GTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGC
genomic: ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATGgtgagtcgtc ... tgaccatcagGTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGC
EST: gi|74238598|gb|DT646512.1|DT646512
EST:     ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATG                         GTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGC
genomic: ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATGgtgagtcgtc ... tgaccatcagGTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGC
EST: gi|78093452|gb|DV521826.1|DV521826
EST:     ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATG                         GTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGC
genomic: ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATGgtgagtcgtc ... tgaccatcagGTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGC
EST: gi|71760181|gb|DR958118.1|DR958118
EST:     ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATG                         GTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGC
genomic: ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATGgtgagtcgtc ... tgaccatcagGTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGC
EST: gi|71761590|gb|DR959527.1|DR959527
EST:     ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATG                         GTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGC
genomic: ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATGgtgagtcgtc ... tgaccatcagGTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGC
EST: gi|88750196|gb|DY534337.1|DY534337
EST:     ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATG                         GTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGC
genomic: ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATGgtgagtcgtc ... tgaccatcagGTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGC
EST: gi|71758416|gb|DR956353.1|DR956353
EST:     ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATG                         GTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGC
genomic: ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATGgtgagtcgtc ... tgaccatcagGTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGC
EST: gi|78074782|gb|DV503216.1|DV503216
EST:     ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATG                         GTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGC
genomic: ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATGgtgagtcgtc ... tgaccatcagGTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGC
EST: gi|26455862|gb|CA827445.1|CA827445
EST:     ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATG                         GTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGC
genomic: ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATGgtgagtcgtc ... tgaccatcagGTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGC
EST: gi|93281414|gb|EB673678.1|EB673678
EST:     ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATG                         GTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGC
genomic: ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATGgtgagtcgtc ... tgaccatcagGTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGC
EST: gi|37382323|gb|CF628103.1|CF628103
EST:     ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATG                         GTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGC
genomic: ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATGgtgagtcgtc ... tgaccatcagGTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGC
EST: gi|76013009|gb|DT940179.1|DT940179
EST:     ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATG                         GTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGC
genomic: ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATGgtgagtcgtc ... tgaccatcagGTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGC
EST: gi|76293702|gb|DV033270.1|DV033270
EST:     ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATG                         GTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGC
genomic: ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATGgtgagtcgtc ... tgaccatcagGTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGC
EST: gi|74239374|gb|DT647288.1|DT647288
EST:     ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATG                         GTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGC
genomic: ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATGgtgagtcgtc ... tgaccatcagGTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGC
EST: gi|19770144|gb|BQ034865.1|BQ034865
EST:     ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATG                         GTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGC
genomic: ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATGgtgagtcgtc ... tgaccatcagGTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGC
EST: gi|71427238|gb|DR808288.1|DR808288
EST:     ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATG                         GTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGC
genomic: ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATGgtgagtcgtc ... tgaccatcagGTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGC
EST: gi|78115472|gb|DV533860.1|DV533860
EST:     ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATG                         GTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGC
genomic: ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATGgtgagtcgtc ... tgaccatcagGTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGC
EST: gi|37399694|gb|CF637180.1|CF637180
EST:     ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCAATATG                         GTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGC
genomic: ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATGgtgagtcgtc ... tgaccatcagGTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGC
EST: gi|71760562|gb|DR958499.1|DR958499
EST:     ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATG                         GTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGC
genomic: ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATGgtgagtcgtc ... tgaccatcagGTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGC
EST: gi|71440636|gb|DR821686.1|DR821686
EST:     ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATG                         GTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGC
genomic: ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATGgtgagtcgtc ... tgaccatcagGTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGC
EST: gi|78080129|gb|DV508541.1|DV508541
EST:     ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATG                         GTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGC
genomic: ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATGgtgagtcgtc ... tgaccatcagGTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcttaccaacttccacaatctgaatgtttctgacattttgcaatgaccatcagGTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGCAGCAACACGGCCACCTCCGAGCCGTCCTCACCCAAGTCCCTGCACTCGC
                             ttctgac  putative branch site (score: 2)
                        aatgttt  TA-rich tract