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gtaaagcttaagcaactatagtttgttgttcgagaaaaaaaactagttttgtatattgtgcaatgtctgaagcttatgttcactgtttcatctgctgcagCTGAATAATGTTGCCAGCCTGTGGTTCATGTCACTTTTTATCTGCATTTTTGCTACGAGCATCCTAGAAATGAGATGGAGTGGTGTTGGAATTGATGACT
species | Zea mays |
transcript | GRMZM2G025231_T02 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TACATTGCCTGCCATCTGTTTATTGACAGGGAAATTTATCACTCCAGAG CTGAATAATGTTGCCAGCCTGTGGTTCATGTCACTTTTTATCTGCATTTTTEST: gi|94474954|gb|EB703912.1|EB703912
genomic: TACATTGCCTGCCATCTGTTTATTGACAGGGAAATTTATCACTCCAGAGgtaaagctta ... tctgctgcagCTGAATAATGTTGCCAGCCTGTGGTTCATGTCACTTTTTATCTGCATTTTT
EST: GGGAAATTTATCACTCCAGAG CTGAATAATGTTGCCAGCCTGTGGTTCATGTCACTTTTTATCTGCATTTTTEST: gi|32849428|gb|CD989109.1|CD989109
genomic: GGGAAATTTATCACTCCAGAGgtaaagctta ... tctgctgcagCTGAATAATGTTGCCAGCCTGTGGTTCATGTCACTTTTTATCTGCATTTTT
EST: TACATTGCCTGCCATCTGTTTATTGACAGGGAAATTTATCACTCCAGAG CTGAATAATGTTGCCAGCCTGTGGTTCATGTCACTTTTTATCTGCATTTTTEST: gi|88752891|gb|DY537032.1|DY537032
genomic: TACATTGCCTGCCATCTGTTTATTGACAGGGAAATTTATCACTCCAGAGgtaaagctta ... tctgctgcagCTGAATAATGTTGCCAGCCTGTGGTTCATGTCACTTTTTATCTGCATTTTT
EST: GTACATTGCCTGCCATCTGTTTATTGACAGGNAAATTTATCACTCCAGAG CTGAATAATGTTGCCAGCCTGTGGGTCATGTCACTTTTTATCTGCATTTTTEST: gi|67012262|gb|CO441011.1|CO441011
genomic: GTACATTGCCTGCCATCTGTTTATTGACAGGGAAATTTATCACTCCAGAGgtaaagctta ... tctgctgcagCTGAATAATGTTGCCAGCCTGTGGTTCATGTCACTTTTTATCTGCATTTTT
EST: GTACATTGCCTGCCATCTGTTTATTGACAGGGAAATTTATCACTCCAGAG CTGAATAATGTTGCCAGCCTGTGGTTCATGTCACTTTTTATCTGCATTTTTEST: gi|211121712|gb|FL408178.1|FL408178
genomic: GTACATTGCCTGCCATCTGTTTATTGACAGGGAAATTTATCACTCCAGAGgtaaagctta ... tctgctgcagCTGAATAATGTTGCCAGCCTGTGGTTCATGTCACTTTTTATCTGCATTTTT
EST: GTACATTGCCTGSCATCTGTTTATTGACAGGGAAATTTATCACTCCAGAG CTGAATAATGTTGCCAGEST: gi|32833246|gb|CD972924.1|CD972924
genomic: GTACATTGCCTGCCATCTGTTTATTGACAGGGAAATTTATCACTCCAGAGgtaaagctta ... tctgctgcagCTGAATAATGTTGCCAG
EST: ACATTGCCTGCCATCTGTTTATTGACAGGGAAATTTATCACTCCAGAG CTGAATAATGTTGCCAGCCTGTGGTTCATGTCACTTTTTATCTGCATTTTTEST: gi|32835222|gb|CD974900.1|CD974900
genomic: ACATTGCCTGCCATCTGTTTATTGACAGGGAAATTTATCACTCCAGAGgtaaagctta ... tctgctgcagCTGAATAATGTTGCCAGCCTGTGGTTCATGTCACTTTTTATCTGCATTTTT
EST: GTACATTGCCTGCCATCTGTTTATTGACAGGGAAATTTATCACTCCAGAG CTGAATAATGTTGCCAGCCTGTGGTTCATGTCACTTTTTATCTGCATTTTTEST: gi|32833958|gb|CD973636.1|CD973636
genomic: GTACATTGCCTGCCATCTGTTTATTGACAGGGAAATTTATCACTCCAGAGgtaaagctta ... tctgctgcagCTGAATAATGTTGCCAGCCTGTGGTTCATGTCACTTTTTATCTGCATTTTT
EST: TACATTGCCTGCCATCTGTTTATTGACAGGGAAATTTATCACTCCAGAG CTGAATAATGTTGCCAGCCTGTGGTTCATGTCACTTTTTATCTGCATTTTTEST: gi|67029021|gb|CO457770.1|CO457770
genomic: TACATTGCCTGCCATCTGTTTATTGACAGGGAAATTTATCACTCCAGAGgtaaagctta ... tctgctgcagCTGAATAATGTTGCCAGCCTGTGGTTCATGTCACTTTTTATCTGCATTTTT
EST: GTACATTGCCTGCCATCTGTTTATTGACAGGGAAATTTATCACTCCAGAG CTGAATAATGTTGCCAGCCTGTGGTTCATGTCACTTTTTATCTGCATTTTTEST: gi|67014493|gb|CO443242.1|CO443242
genomic: GTACATTGCCTGCCATCTGTTTATTGACAGGGAAATTTATCACTCCAGAGgtaaagctta ... tctgctgcagCTGAATAATGTTGCCAGCCTGTGGTTCATGTCACTTTTTATCTGCATTTTT
EST: GTACATTGCCTGCCATCTGTTTATTGACAGGGAAATTTATCACTCCAGAG CTGAATAATGTTGCCAGCCTGTGGTTCATGTCACTTTTTATCTGCATTTTTEST: gi|32916441|gb|CF021253.1|CF021253
genomic: GTACATTGCCTGCCATCTGTTTATTGACAGGGAAATTTATCACTCCAGAGgtaaagctta ... tctgctgcagCTGAATAATGTTGCCAGCCTGTGGTTCATGTCACTTTTTATCTGCATTTTT
EST: GTACATTGCCTGCCATCTGTTTATTGACAGGGAAATTTATCACTCCAGAG CTGAATAATGTTGCCAGCCTGTGGTTCATGTCACTTTTTATCTGCATTTTTEST: gi|32856218|gb|CD995899.1|CD995899
genomic: GTACATTGCCTGCCATCTGTTTATTGACAGGGAAATTTATCACTCCAGAGgtaaagctta ... tctgctgcagCTGAATAATGTTGCCAGCCTGTGGTTCATGTCACTTTTTATCTGCATTTTT
EST: GTACATTGCCTGCCATCTGTTTATTGACAGGGAAATTTATCACTCCAGAG CTGAATAATGGTGCCAGCCTGTGGTTCATGTCACTTTTTATCTGCATTTTTEST: gi|32928606|gb|CF033418.1|CF033418
genomic: GTACATTGCCTGCCATCTGTTTATTGACAGGGAAATTTATCACTCCAGAGgtaaagctta ... tctgctgcagCTGAATAATGTTGCCAGCCTGTGGTTCATGTCACTTTTTATCTGCATTTTT
EST: GCACATTGCCTGCCATCTGTTTATTGACAGGGAAATTTATCACTCCAGAG CTGAATAATGTTGCCAGCCTGTGGTTCATGTCACTTTTTATCTGCATTTTTEST: gi|67018557|gb|CO447306.1|CO447306
genomic: GTACATTGCCTGCCATCTGTTTATTGACAGGGAAATTTATCACTCCAGAGgtaaagctta ... tctgctgcagCTGAATAATGTTGCCAGCCTGTGGTTCATGTCACTTTTTATCTGCATTTTT
EST: CCTGCCATNNCTGTTTATGTGACAGGGGAAATTTATCACTCCAGAG CTGAATAATGTTGCCAGCCTGTGGTTCATGTCACTTTTTATCTGCATTTTTEST: gi|94475064|gb|EB704022.1|EB704022
genomic: CCTGCCAT--CTGTTTAT-TGACA-GGGAAATTTATCACTCCAGAGgtaaagctta ... tctgctgcagCTGAATAATGTTGCCAGCCTGTGGTTCATGTCACTTTTTATCTGCATTTTT
EST: GTACATTGCCTGCCATCTGTTTATTGACAGGGAAATTTATCACTCCAGAG CTGAATAATGTTGCCAGCCTGTGGTTCATGTCACTTTTTATCTGCATTTTTEST: gi|71324690|gb|DR799051.1|DR799051
genomic: GTACATTGCCTGCCATCTGTTTATTGACAGGGAAATTTATCACTCCAGAGgtaaagctta ... tctgctgcagCTGAATAATGTTGCCAGCCTGTGGTTCATGTCACTTTTTATCTGCATTTTT
EST: GTACATTGCCTGCCATCTGTTTATTGACAGGGAAATTTATCACTCCAGAG CTGAATAATGTTGCCAGCCTGTGGTTCATGTCACTTTTTATCTGCATTTTT
genomic: GTACATTGCCTGCCATCTGTTTATTGACAGGGAAATTTATCACTCCAGAGgtaaagctta ... tctgctgcagCTGAATAATGTTGCCAGCCTGTGGTTCATGTCACTTTTTATCTGCATTTTT
gttttgtatattgtgcaatgtctgaagcttatgttcactgtttcatctgctgcagCTGAATAATGTTGCCAGCCTGTGGTTCATGTCACTTTTTATCTGCATTTTTGCTACGAGCATCCTAGAAATGAGATGGAGTGGTGTTGGAATTGATGACT
tttcatct CT-rich tract
tatattgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaagcttaagcaactatagtttgttgttcgagaaaaaaaactagttttgtatattgtgcaatgtctgaagcttatgttcactgtttcatctgctgcagCTGAATAATGTTGCCAGCCTGTGGTTCATGTCACTTTTTATCTGCATTTTTGCTACGAGCATCCTAGAAATGAGATGGAGTGGTGTTGGAATTGATGACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA