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gtaagatgcagtaacctttcatcgtgctgatttgtacttataaaacaaattgaagaaacataaaacccatcttgcagGTATGTTGAATGTACATCAGCAGCAATTCAGGCCCTGACATCATTCAAAAAACTATACCCTGGGCACCGCAGGAAAGAGGTGGATAACTGTATCAGCAAA
species | Zea mays |
transcript | GRMZM2G023798_T01 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: CTGATCAATCCTGCTGAGACCTTTGGGGATATTGTGATTGATTACCC GTATGTTGAATGTEST: gi|18659473|gb|BM500356.1|BM500356
genomic: CTGATCAATCCCGCTGAGACCTTTGGGGATATTGTGATTGATTACCCgtaagatgca ... catcttgcagGTATGTTGAATGT
EST: CTGATCAATCCTGCTGAGACCTTTGGGGATATNGTGATTGATTACCC GTATGTTGAATGTACATCAGCAGCAATTCAGGNCCTGACATCATTCAAAAAEST: gi|61118731|gb|DN559692.1|DN559692
genomic: CTGATCAATCCCGCTGAGACCTTTGGGGATATTGTGATTGATTACCCgtaagatgca ... catcttgcagGTATGTTGAATGTACATCAGCAGCAATTCAGGCCCTGACATCATTCAAAAA
EST: CTGATCAATCCTGCTGAGACCTTTGGGGATATTGTGATTGATTACCC GTATGTTGAATGTACATCAGCAGCAATTCAGGCCCTGACATCATTCAAAAAEST: gi|5566676|gb|AI881587.1|AI881587
genomic: CTGATCAATCCCGCTGAGACCTTTGGGGATATTGTGATTGATTACCCgtaagatgca ... catcttgcagGTATGTTGAATGTACATCAGCAGCAATTCAGGCCCTGACATCATTCAAAAA
EST: CTGATCAATCCTGCTGAGACCTTTGGGGATATTGTGATTGATTACCC GTATGTTGAATGTACATCAGCAGCAATTCAGGCCCTGACATCATTCAAAAAEST: gi|87156285|gb|DY401074.1|DY401074
genomic: CTGATCAATCCCGCTGAGACCTTTGGGGATATTGTGATTGATTACCCgtaagatgca ... catcttgcagGTATGTTGAATGTACATCAGCAGCAATTCAGGCCCTGACATCATTCAAAAA
EST: CTGATCAATCCTGCTGAGACCTTTGGGGATATTGTGATTGATTACCC GTAATGT-GAATGTACATCAACAGCAATTCAGGCCCTGACATCATTCAAAA
genomic: CTGATCAATCCCGCTGAGACCTTTGGGGATATTGTGATTGATTACCCgtaagatgca ... catcttgcagGTA-TGTTGAATGTACATCAGCAGCAATTCAGGCCCTGACATCATTCAAAA
cgtgctgatttgtacttataaaacaaattgaagaaacataaaacccatcttgcagGTATGTTGAATGTACATCAGCAGCAATTCAGGCCCTGACATCATTCAAAAAACTATACCCTGGGCACCGCAGGAAAGAGGTGGATAACTGTATCAGCAAA
tgctgat putative branch site (score: 3)
cccatctt putative PPT
ttataaaacaaattga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagatgcagtaacctttcatcgtgctgatttgtacttataaaacaaattgaagaaacataaaacccatcttgcagGTATGTTGAATGTACATCAGCAGCAATTCAGGCCCTGACATCATTCAAAAAACTATACCCTGGGCACCGCAGGAAAGAGGTGGATAACTGTATCAGCAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA