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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggatgatttctttgcttggtttactttggatagaatgtgctttggcgcaactgagaaaagtgcatgccacttgcttgggcagGGTGTTGATGATCTCATTAACATATTCCGGCGGCCTCCATCACGCAAACTCAAGGGTGCATAGGCTAGGCTGTGTTTTGTGTATTAGCGCCAGCCAAGAG

Basic information

species Zea mays
transcript GRMZM2G021784_T01
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G021784_T01 (Zea mays), 3'ss of exon 13
lower sequence: LOC_Os08g01180.1 (Oryza sativa), 3'ss of exon 13
gtatggatgatttctttgcttggtttactttggatagaatgtgctttggcgcaactg-agaaaagtgcatgccacttgcttgggcagGGTGTTGATGATCTCATTAACATATTCCGGCGGCCTCCATCACGCAAACTCAAGGGTGCATA---GGCTAGGCTGTGTTTTGTGTATTAGCGCCAGCCAAGAG
||||| || |||||    |||    ||  |  || || | |  |||||      ||| ||   ||  | |     ||  ||   |||||| ||||||||||||| |||||||||||||| || |||||||||||  ||||||| |||||   |  |||  |||| ||||||||||||   |    ||   
gtatgtatcatttcaagccttcaaata--taagacaggaag--ctttgtttttcctgcagttgagaacttatttttt--ttaatcagGGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTCAAGGGGGCATAATAGAATAGATTGTGCTTTGTGTATTAGTATCCAGGAA---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32826964|gb|CD966642.1|CD966642
EST:     TCGGCTCCTACCTGATTGTTCTCTTCTGTTTCCTAGTGATTACTACACGG                         GGTGTTGATGATCTCATTA
genomic: TCGGCTCCTACCTGATTGTTCTCTTCTGTTTCCTAGTGATTACTACACGGgtatggatga ... gcttgggcagGGTGTTGATGATCTCATTA
EST: gi|4647018|gb|AI622093.1|AI622093
EST:     TCGGCTCCTACCTGATTGTTCTCTTCTGTTTCCTAGTGATTACTACACGG                         GGTGTTGATGATCTCATTAACATATTCCGGCGGCCTCCATCACGCAAACTC
genomic: TCGGCTCCTACCTGATTGTTCTCTTCTGTTTCCTAGTGATTACTACACGGgtatggatga ... gcttgggcagGGTGTTGATGATCTCATTAACATATTCCGGCGGCCTCCATCACGCAAACTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggatagaatgtgctttggcgcaactgagaaaagtgcatgccacttgcttgggcagGGTGTTGATGATCTCATTAACATATTCCGGCGGCCTCCATCACGCAAACTCAAGGGTGCATAGGCTAGGCTGTGTTTTGTGTATTAGCGCCAGCCAAGAG
                                          cttgctt  CT-rich tract