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gtcagaatctttacctatataaacatagtccacgtactgtcttgtttttttttatttttttgtctctcatcgtttcttttctgctgaaattcagGTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAACGGCGCGACATACGACACCCCCGATAGCGCGAAGCTCATGCTGCTCCGCCTCCACAGCA
species | Zea mays |
transcript | GRMZM2G019986_T01 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: AGTTTATATTCGACGCCTTCACTTACTCCCCATCCACAGAGCTTTTCGAG GTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAACGGCGCGACAEST: gi|78089271|gb|DV517645.1|DV517645
genomic: AGTTTATATTCGACGCCTTCACTTACTCCCCATCCACAGAGCTTTTCGAGgtcagaatct ... tgaaattcagGTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAACGGCGCGACA
EST: AGTTTATATTCGACGCCTTCACTTACTCCCCATCCACAGAGCTTTTCGAG GTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAACGGCGCGACAEST: gi|211210620|gb|FL436849.1|FL436849
genomic: AGTTTATATTCGACGCCTTCACTTACTCCCCATCCACAGAGCTTTTCGAGgtcagaatct ... tgaaattcagGTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAACGGCGCGACA
EST: AGTTTATATTNGACGCCTTCACTTACTCCCCATCCACAGAGCTTTTCGAG GTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAACGGCGCGACAEST: gi|110497708|gb|EE015394.1|EE015394
genomic: AGTTTATATTCGACGCCTTCACTTACTCCCCATCCACAGAGCTTTTCGAGgtcagaatct ... tgaaattcagGTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAACGGCGCGACA
EST: AGTTTATATTCGACGCCTTCACTTACTCCCCATCCACAGAGCTTTTCGAG GTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAACGGCGCGACAEST: gi|211406613|gb|FL094209.1|FL094209
genomic: AGTTTATATTCGACGCCTTCACTTACTCCCCATCCACAGAGCTTTTCGAGgtcagaatct ... tgaaattcagGTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAACGGCGCGACA
EST: AGTTTATATTCGACGCCTTCACTTACTCCCCATCCACAGAGCTTTTCGAG GTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAACGGCGCGACAEST: gi|16919474|gb|BM074209.1|BM074209
genomic: AGTTTATATTCGACGCCTTCACTTACTCCCCATCCACAGAGCTTTTCGAGgtcagaatct ... tgaaattcagGTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAACGGCGCGACA
EST: CCCATCCACAGAGCTTTTCGAG GTCATGCGGGAGAAAAAATTCGCGCCGGTAAAGAACGCCAGCGGCGCGACAEST: gi|5124174|gb|AI745798.1|AI745798
genomic: CCCATCCACAGAGCTTTTCGAGgtcagaatct ... tgaaattcagGTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAACGGCGCGACA
EST: AGTTTATATTCGACGCCTTCACTTACTCCCCATCCACGGAGCTTTTCGAG GTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAACGGCGCGACAEST: gi|211288805|gb|FL433953.1|FL433953
genomic: AGTTTATATTCGACGCCTTCACTTACTCCCCATCCACAGAGCTTTTCGAGgtcagaatct ... tgaaattcagGTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAACGGCGCGACA
EST: AGTTTATATTCGACGCCTTCACTTACTCCCCATCCACAGAGCTTTTCGAG GTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAACGGCGCGACAEST: gi|211442520|gb|FL447109.1|FL447109
genomic: AGTTTATATTCGACGCCTTCACTTACTCCCCATCCACAGAGCTTTTCGAGgtcagaatct ... tgaaattcagGTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAACGGCGCGACA
EST: TTCGACGCCTTCACTTACTCCCCATCCACAGAGCTTTTCGAG GTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAACGGCGCGACAEST: gi|18169117|gb|BM338957.1|BM338957
genomic: TTCGACGCCTTCACTTACTCCCCATCCACAGAGCTTTTCGAGgtcagaatct ... tgaaattcagGTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAACGGCGCGACA
EST: AGTTTATATTCGACGCCTTCACTTACTCCCCATCCACAGAGCTTTTCGAG GTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAACGGCGCGACAEST: gi|16379775|gb|BI993142.1|BI993142
genomic: AGTTTATATTCGACGCCTTCACTTACTCCCCATCCACAGAGCTTTTCGAGgtcagaatct ... tgaaattcagGTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAACGGCGCGACA
EST: AGTTTATATTCGACGCCTTCACTTACTCCCCATCCACAGAGCTTTTCGAG GTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAACGGCGCGACAEST: gi|71774723|gb|DR972601.1|DR972601
genomic: AGTTTATATTCGACGCCTTCACTTACTCCCCATCCACAGAGCTTTTCGAGgtcagaatct ... tgaaattcagGTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAACGGCGCGACA
EST: AGTTTATATTCGACGCCTTCACTTACTCCCCATCCACAGAGCTTTTCGAG GTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAACGGCGCGACAEST: gi|18649167|gb|BM497986.1|BM497986
genomic: AGTTTATATTCGACGCCTTCACTTACTCCCCATCCACAGAGCTTTTCGAGgtcagaatct ... tgaaattcagGTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAACGGCGCGACA
EST: TTTATATTCGACGCCTTCACTTACTCCCCATCCACGGAGCCTTTCGAG GTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAACGGCGCGACAEST: gi|18172348|gb|BM347736.1|BM347736
genomic: TTTATATTCGACGCCTTCACTTACTCCCCATCCACAGAGCTTTTCGAGgtcagaatct ... tgaaattcagGTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAACGGCGCGACA
EST: AGTTTATATTCGACGCCTTCACTTACTCCCCATCCACAGAGCTTTTCGAG GTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAACGGCGCGACAEST: gi|148935255|gb|EC879292.2|EC879292
genomic: AGTTTATATTCGACGCCTTCACTTACTCCCCATCCACAGAGCTTTTCGAGgtcagaatct ... tgaaattcagGTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAACGGCGCGACA
EST: AGTTTATATTCGACGCCTTCACTTACTCCCCATCCACAGAGCTTTTCGAG GTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAACGGCGCGACAEST: gi|149102321|gb|EE287688.2|EE287688
genomic: AGTTTATATTCGACGCCTTCACTTACTCCCCATCCACAGAGCTTTTCGAGgtcagaatct ... tgaaattcagGTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAACGGCGCGACA
EST: AGTTTATATTCGACGCCTTCACTTACTCCCCATCCACAGAGCTTTTCGAG GTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAACGGCGCGACAEST: gi|18166601|gb|BM336440.1|BM336440
genomic: AGTTTATATTCGACGCCTTCACTTACTCCCCATCCACAGAGCTTTTCGAGgtcagaatct ... tgaaattcagGTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAACGGCGCGACA
EST: AGTTTATATTCGACGCCTTCACTTACTCCCCATCCACAGAGCTTTTCGAG GTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAACGGCGCGACAEST: gi|37387607|gb|CF631001.1|CF631001
genomic: AGTTTATATTCGACGCCTTCACTTACTCCCCATCCACAGAGCTTTTCGAGgtcagaatct ... tgaaattcagGTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAACGGCGCGACA
EST: AGTTNATATTCGACGCCTTCACTTACTCCCCATCCACGGAGCTTTTCGAG GTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAACGGCGCGACAEST: gi|110214878|gb|EC896775.1|EC896775
genomic: AGTTTATATTCGACGCCTTCACTTACTCCCCATCCACAGAGCTTTTCGAGgtcagaatct ... tgaaattcagGTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAACGGCGCGACA
EST: AGTTTATATTCGACGCCTTCACTTACTCCCCATCCACAGAGCTTTTCGAG GTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAACGGCGCGACAEST: gi|10450879|gb|BE924803.1|BE924803
genomic: AGTTTATATTCGACGCCTTCACTTACTCCCCATCCACAGAGCTTTTCGAGgtcagaatct ... tgaaattcagGTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAACGGCGCGACA
EST: AGCTTTTCGAG GTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAACGGCGCGACAEST: gi|40335845|gb|CK369915.1|CK369915
genomic: AGCTTTTCGAGgtcagaatct ... tgaaattcagGTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAACGGCGCGACA
EST: AGTTTATATTCGACGCCTTCACTTACTCCCCATCCACGGAGCTTTTCGAG GTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAACGGCGCGACAEST: gi|18164359|gb|BM334198.1|BM334198
genomic: AGTTTATATTCGACGCCTTCACTTACTCCCCATCCACAGAGCTTTTCGAGgtcagaatct ... tgaaattcagGTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAACGGCGCGACA
EST: AGTTTATATTCGACGCCTTCACTTACTCCCCATCCACAGAGCTTTTCGAG GTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAACGGCGCGACAEST: gi|67018099|gb|CO446848.1|CO446848
genomic: AGTTTATATTCGACGCCTTCACTTACTCCCCATCCACAGAGCTTTTCGAGgtcagaatct ... tgaaattcagGTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAACGGCGCGACA
EST: AGTTTATATTCGACGCCTTCACTTACTCCCCATCCACGGAGCTTTTCGAG GTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAACGGCGCGACAEST: gi|37375243|gb|CF624047.1|CF624047
genomic: AGTTTATATTCGACGCCTTCACTTACTCCCCATCCACAGAGCTTTTCGAGgtcagaatct ... tgaaattcagGTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAACGGCGCGACA
EST: AGTTTATATTCGACGCCTTCACTTACTCCCCATCCACGGAGCTTTTCGAG GTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAACGGCGCGACAEST: gi|18166599|gb|BM336438.1|BM336438
genomic: AGTTTATATTCGACGCCTTCACTTACTCCCCATCCACAGAGCTTTTCGAGgtcagaatct ... tgaaattcagGTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAACGGCGCGACA
EST: AGTTTATATTCGACGCCTTCACTTACTCCCCATCCACAGAGCTTTTCGAG GTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAACGGCGCGACAEST: gi|18167755|gb|BM337595.1|BM337595
genomic: AGTTTATATTCGACGCCTTCACTTACTCCCCATCCACAGAGCTTTTCGAGgtcagaatct ... tgaaattcagGTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAACGGCGCGACA
EST: AGTTTATATTCGACGCCTTCACTTACTCCCCATCCACAGAGCTTTTCGAG GTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAACGGCGCGACAEST: gi|17931736|gb|BM268696.1|BM268696
genomic: AGTTTATATTCGACGCCTTCACTTACTCCCCATCCACAGAGCTTTTCGAGgtcagaatct ... tgaaattcagGTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAACGGCGCGACA
EST: AGTTTATATTCGACGCCTTCACTTACTCCCCATCCACAGAGCTTTTCGAG GTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAACGGCGCGACAEST: gi|40303710|gb|CK348097.1|CK348097
genomic: AGTTTATATTCGACGCCTTCACTTACTCCCCATCCACAGAGCTTTTCGAGgtcagaatct ... tgaaattcagGTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAACGGCGCGACA
EST: AGTTTATATTCGACGCCTTCACTTACTCCCCATCCACGGAGCTTTTCGAG GTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAACGGCGCGACA
genomic: AGTTTATATTCGACGCCTTCACTTACTCCCCATCCACAGAGCTTTTCGAGgtcagaatct ... tgaaattcagGTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAACGGCGCGACA
tcttgtttttttttatttttttgtctctcatcgtttcttttctgctgaaattcagGTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAACGGCGCGACATACGACACCCCCGATAGCGCGAAGCTCATGCTGCTCCGCCTCCACAGCA
tttttttatttttttg CT-rich tract
tttttttttatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagaatctttacctatataaacatagtccacgtactgtcttgtttttttttatttttttgtctctcatcgtttcttttctgctgaaattcagGTCATGCGGGAGGAGGAATTCGCGCCGGTAAAGAACGCCAACGGCGCGACATACGACACCCCCGATAGCGCGAAGCTCATGCTGCTCCGCCTCCACAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT