1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...ggaacgccattgaaactctgtcatctcttacatgccttcaactcaacttatacctgtagaagataataagttttacatacttacaggatgtactttgtagGTGTACAGAAACTTACTTCTAGCTAATGAATATCAATCGTCAAAGCTGTGTGAAGCTCGCTTTTCTGAGTGTGAAGATAAGATGGATCACCTTCAAGTCT
species | Zea mays |
transcript | GRMZM2G019361_T02 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: AACATCATGCTGCTCAGTCAGCTCTCAAGCTTGAAGATGATATTAAAAAG ----A-A-A--CTTACTTCTAGCTAATGAATATCAATCGTCAAAGCTGTGTEST: gi|40335094|gb|CK369164.1|CK369164
genomic: AACATCATGCTGCTCAGTCAGCTCTCAAGCTTGAAGATGATATTAAAAAGgttaatattt ... tactttgtagGTGTACAGAAACTTACTTCTAGCTAATGAATATCAATCGTCAAAGCTGTGT
EST: AACATCATGCTGCTCAGTCAGCTCTCAAGCTTGAAGATG--ATTAAAAAG GTGTACAGAAACTTACTTCTAGCTAATGAATATCAATCGGCAAAGCTGTGTEST: gi|26456765|gb|CA828348.1|CA828348
genomic: AACATCATGCTGCTCAGTCAGCTCTCAAGCTTGAAGATGATATTAAAAAGgttaatattt ... tactttgtagGTGTACAGAAACTTACTTCTAGCTAATGAATATCAATCGTCAAAGCTGTGT
EST: AACATCATGCTGCTCAG-CAGCTCTCAAGCTTGAAGATGATATTAAAAAG G-GTACAGAAACTTACTTCTAGCTAATGAATATCAATCGGCAAAGCTGTGT
genomic: AACATCATGCTGCTCAGTCAGCTCTCAAGCTTGAAGATGATATTAAAAAGgttaatattt ... tactttgtagGTGTACAGAAACTTACTTCTAGCTAATGAATATCAATCGTCAAAGCTGTGT
acttatacctgtagaagataataagttttacatacttacaggatgtactttgtagGTGTACAGAAACTTACTTCTAGCTAATGAATATCAATCGTCAAAGCTGTGTGAAGCTCGCTTTTCTGAGTGTGAAGATAAGATGGATCACCTTCAAGTCT
tacttac putative branch site (score: 40)
ataataagttttacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggaacgccattgaaactctgtcatctcttacatgccttcaactcaacttatacctgtagaagataataagttttacatacttacaggatgtactttgtagGTGTACAGAAACTTACTTCTAGCTAATGAATATCAATCGTCAAAGCTGTGTGAAGCTCGCTTTTCTGAGTGTGAAGATAAGATGGATCACCTTCAAGTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - tacatgc
- - - - - - - - - - - - - - - - - - - -aactcaa
- - - - - - - - - - - - - - - - - - - - - - - - - -acctgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaagataa