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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattgattcatcattgtcactctttgccctgttgtggctttatccgtattttacttgtcttgctcctttatttcagAATTCTAATGATGATGCAAGTTGTAGCTTCTCACAAAAATGAAAACCTAATGAGCACTTCAGCCGTGGCGGCATGCATGGCACCCTTACTTCTTCGACCC

Basic information

species Zea mays
transcript GRMZM2G019153_T01
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G019153_T01 (Zea mays), 3'ss of exon 13
lower sequence: Vv18s0001g07310.t01 (Vitis vinifera), 3'ss of exon 11
-----gtaattgattcatcattgtcactct-ttgccctgttgtggc----------tttatccgtattt-----tacttgtcttgctcctttat-ttcagAATTCTAATGATGATGCAAGTTGTAGCTTCTCACAAAAATGAAAACCTAATGAGCACTTCAGCCGTGGCGGCATGCATGGCACCCTTACTTCTTCGACCC
      || || |||     |  |  || | |||| ||  | | ||           || ||| | |||     |  || | |   |||| |   | ||||||||||||||||||||||  ||| ||||||||||||  ||| || | ||||||| ||||||| ||| | || ||||||||||| ||||||||||| |||
aaaaaatagtttatttgctttctttgctttcttgctctaatttagcagcagttgcacttctccatgtttaaacttgtttatttcattcctctgcatccagAATTCTAATGATGATGCAAACTGTGGCTTCTCACAAAGCTGAGAATCGAATGAGCTCTTCAGCTGTGTCTGCTTGCATGGCACCTTTACTTCTTCGTCCC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttgccctgttgtggctttatccgtattttacttgtcttgctcctttatttcagAATTCTAATGATGATGCAAGTTGTAGCTTCTCACAAAAATGAAAACCTAATGAGCACTTCAGCCGTGGCGGCATGCATGGCACCCTTACTTCTTCGACCC
                           ttttacttgtcttgct  CT-rich tract
                         tattttactt  TA-rich tract