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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatggttgtgttgtactcagggtatcattgaatcatcagtaatagctgtgaagaaataaatggatcaactgtcacattaagctttctgtttgggtcttcaatccattgtcatgcaattagggcatttcatttcagGGATCATCCAGTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAG

Basic information

species Zea mays
transcript GRMZM2G017086_T02
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G017086_T03 (Zea mays), 3'ss of exon 14
lower sequence: LOC_Os01g36930.1 (Oryza sativa), 3'ss of exon 14
gtaatggttgtgttgtactcagggtatcattgaatcatcagta-atagctgtgaagaaataaatggatcaactgt------------cacattaagctttctg-------tttgggtcttcaatccattgtcatgcaattagggcatttcatttcagGGATCATCCAGTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAG
||||||||  |   | |       |||  |||| ||||||||  | || |||  ||| ||      ||||    |            ||  |||| |  ||         ||| |  ||| ||   ||  | | | | ||   ||| |||||||||||| ||||| || |  ||||||||||||||||| ||||| ||||||||||
gtaatggtctttaggaat-----atatggttgattcatcagtttagagttgttgagacatgcgcttatcattcttttgttgagcacacatgttaaccactccaaaatgccttttgtacttgaacggatccttacggagtt---gcacttcatttcagGGTTCATCAAGCAATGCTGGGGAATCATCCAGCATGGATATTGACAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16378498|gb|BI992465.1|BI992465
EST:     AGTTTGGATTGAAAGCACAAGGGAAAGCTAGCGGCTTTAAAGAAAATGAG                         GGATCATCCAGTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAG
genomic: AGTTTGGATTGAAAGCACAAGGGAAAGCTAGCGGCTTTAAAGAAAATGAGgtaatggttg ... ttcatttcagGGATCATCCAGTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAG
EST: gi|32866634|gb|CF006316.1|CF006316
EST:     AGGGAAAGCTAGCGGCTTTAAAGAAAATGAG                         GGATCATCCAGTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAG
genomic: AGGGAAAGCTAGCGGCTTTAAAGAAAATGAGgtaatggttg ... ttcatttcagGGATCATCCAGTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAG
EST: gi|12968042|gb|BG264989.1|BG264989
EST:     AGTTTGGATTGAAAGCACAAGGGAAAGCTAGCGGCTTTAAAGAAAATGAG                         GGATCATCCAGTAGCGCTGGGGAATCATCCAGTATGGACATTGGCAAAG
genomic: AGTTTGGATTGAAAGCACAAGGGAAAGCTAGCGGCTTTAAAGAAAATGAGgtaatggttg ... ttcatttcagGGATCATCCAGTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAG
EST: gi|31910881|gb|CD651645.1|CD651645
EST:     AGTTTGGATTGAAAGCACAAGGGAAAGCTAGCGGCTTTAAAGAAAATGAG                         GGATCATCCAGTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAG
genomic: AGTTTGGATTGAAAGCACAAGGGAAAGCTAGCGGCTTTAAAGAAAATGAGgtaatggttg ... ttcatttcagGGATCATCCAGTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAG
EST: gi|50332355|gb|CO527481.1|CO527481
EST:     AGTTTGGATTGAAAGCACAAGGGAAAGCTAGCGGCTTTAAAGAAAATGAG                         GGATCATCCAGTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAG
genomic: AGTTTGGATTGAAAGCACAAGGGAAAGCTAGCGGCTTTAAAGAAAATGAGgtaatggttg ... ttcatttcagGGATCATCCAGTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAG
EST: gi|5919412|gb|AW054509.1|AW054509
EST:     AAAGCTAGCGGCTTTAAAGAAAATGAG                         GGATCATCCAGTAGCGCTGGGGAATCATCCAGTATGGCCATTGCCAAAG
genomic: AAAGCTAGCGGCTTTAAAGAAAATGAGgtaatggttg ... ttcatttcagGGATCATCCAGTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctttctgtttgggtcttcaatccattgtcatgcaattagggcatttcatttcagGGATCATCCAGTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAG
                                            tttcatttc  CT-rich tract
                                           atttcattt  TA-rich tract