1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtagctttctcttttcactattcagttttgagttgtcaacattattgttccagtattgattttggatgctcaatttgcacgtaaagATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAAGCTAGCGGCTTTAAAGAAAATGAG
species | Zea mays |
transcript | GRMZM2G017086_T01 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: ATGAATTTTGCTCTGATGAACTGAAACAGAAACTCCAAGCACCTCGGCAG ATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAAEST: gi|5932702|gb|AW057063.1|AW057063
genomic: ATGAATTTTGCTCTGATGAACTGAAACAGAAACTCCAAGCACCTCGGCAGgtagctttct ... gcacgtaaagATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAA
EST: ATGAATTTTGCTCTGATGAACTGAAACAGAAACTCCAAGCACCTCGGCAG ATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAAEST: gi|32930058|gb|CF034870.1|CF034870
genomic: ATGAATTTTGCTCTGATGAACTGAAACAGAAACTCCAAGCACCTCGGCAGgtagctttct ... gcacgtaaagATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAA
EST: ATGAATTTTGCTCTGATGAACTGAAACAGAAACTCCAAGCACCTCGGCAG ATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAAEST: gi|33094822|gb|CF054816.1|CF054816
genomic: ATGAATTTTGCTCTGATGAACTGAAACAGAAACTCCAAGCACCTCGGCAGgtagctttct ... gcacgtaaagATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAA
EST: ATGAATTTTGCTCTGATGAACTGAAACAGAAACTCCAAGCACCTCGGCAG ATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAAEST: gi|6056638|gb|AW091043.1|AW091043
genomic: ATGAATTTTGCTCTGATGAACTGAAACAGAAACTCCAAGCACCTCGGCAGgtagctttct ... gcacgtaaagATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAA
EST: ATGAATTTTGCTCTGATGAACTGAAACAGAAACTCCAATCACCTCGGCAG ATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAAEST: gi|5846961|gb|AW000040.1|AW000040
genomic: ATGAATTTTGCTCTGATGAACTGAAACAGAAACTCCAAGCACCTCGGCAGgtagctttct ... gcacgtaaagATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAA
EST: ATGAATTTTGCTCTGATGAACTGAAACAGAAACTCCAAGCACCTCGGCAG ATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAAEST: gi|12968043|gb|BG264990.1|BG264990
genomic: ATGAATTTTGCTCTGATGAACTGAAACAGAAACTCCAAGCACCTCGGCAGgtagctttct ... gcacgtaaagATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAA
EST: ATGAATTTTGCTCTGATGAACTGAAACAGAAACTCCAAGCACCTCGGCAG ATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAAEST: gi|32942933|gb|CF047752.1|CF047752
genomic: ATGAATTTTGCTCTGATGAACTGAAACAGAAACTCCAAGCACCTCGGCAGgtagctttct ... gcacgtaaagATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAA
EST: ATGAATTTTGCTCTGATGAACTGAAACAGAAACTCCAAGCACCTCGGCAG ATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAAEST: gi|67013124|gb|CO441873.1|CO441873
genomic: ATGAATTTTGCTCTGATGAACTGAAACAGAAACTCCAAGCACCTCGGCAGgtagctttct ... gcacgtaaagATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAA
EST: AACAGAATCTCCAAGCACCTCGGCAG ATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAAEST: gi|5901176|gb|AW042276.1|AW042276
genomic: AACAGAAACTCCAAGCACCTCGGCAGgtagctttct ... gcacgtaaagATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAA
EST: ATGAATTTTGCTCTGATGAACTGAAACAGAAACTCCAAGCACCTCGGCAG ATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAAEST: gi|32933054|gb|CF037866.1|CF037866
genomic: ATGAATTTTGCTCTGATGAACTGAAACAGAAACTCCAAGCACCTCGGCAGgtagctttct ... gcacgtaaagATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAA
EST: ATGAATTTTGCTCTGATGAACTGAAACAGAAACTCCAAGCACCTCGGCAG ATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAAEST: gi|5296339|gb|AI783109.1|AI783109
genomic: ATGAATTTTGCTCTGATGAACTGAAACAGAAACTCCAAGCACCTCGGCAGgtagctttct ... gcacgtaaagATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAA
EST: ATGAATTTTGCTCTGATGAACTGAAACAGAAACTCCAAGCACCTCGGCAG ATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAAEST: gi|32934559|gb|CF039371.1|CF039371
genomic: ATGAATTTTGCTCTGATGAACTGAAACAGAAACTCCAAGCACCTCGGCAGgtagctttct ... gcacgtaaagATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAA
EST: ATGAATTTTGCTCTGATGAACTGAAACAGAAACTCCAAGCACCTCGGCAG ATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAAEST: gi|60352250|gb|DN219223.1|DN219223
genomic: ATGAATTTTGCTCTGATGAACTGAAACAGAAACTCCAAGCACCTCGGCAGgtagctttct ... gcacgtaaagATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAA
EST: ATGAATTTTGCTCTGATGAACTGAAACAGAAACTCCAAGCACCTCGGCAG ATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAAEST: gi|50332355|gb|CO527481.1|CO527481
genomic: ATGAATTTTGCTCTGATGAACTGAAACAGAAACTCCAAGCACCTCGGCAGgtagctttct ... gcacgtaaagATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAA
EST: CTGAAACAGAAACTCCAAGCACCTCGGCAG ATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAAEST: gi|32932375|gb|CF037187.1|CF037187
genomic: CTGAAACAGAAACTCCAAGCACCTCGGCAGgtagctttct ... gcacgtaaagATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAA
EST: ATGAATTTTGCTCTGATGAACTGAAACAGAAACTCCAAGCACCTCGGCAG ATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAAEST: gi|32930666|gb|CF035478.1|CF035478
genomic: ATGAATTTTGCTCTGATGAACTGAAACAGAAACTCCAAGCACCTCGGCAGgtagctttct ... gcacgtaaagATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAA
EST: ATGAATTTTGCTCTGATGAACTGAAACAGAAACTCCAAGCACCTCGGCAG ATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAAEST: gi|74240014|gb|DT647928.1|DT647928
genomic: ATGAATTTTGCTCTGATGAACTGAAACAGAAACTCCAAGCACCTCGGCAGgtagctttct ... gcacgtaaagATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAA
EST: ATGAATTTTGCTCTGATGAACTGAAACAGAAACTCCAAGCACCTCGGCAG ATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAAEST: gi|33093538|gb|CF053532.1|CF053532
genomic: ATGAATTTTGCTCTGATGAACTGAAACAGAAACTCCAAGCACCTCGGCAGgtagctttct ... gcacgtaaagATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAA
EST: ATGAATTNTGCTCTGATGAACTGAAACAGAAACTCCAAGCACCTCGGCAG ATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAA
genomic: ATGAATTTTGCTCTGATGAACTGAAACAGAAACTCCAAGCACCTCGGCAGgtagctttct ... gcacgtaaagATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAA
gttgtcaacattattgttccagtattgattttggatgctcaatttgcacgtaaagATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAAGCTAGCGGCTTTAAAGAAAATGAG
tattgat putative branch site (score: 3)
tattgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagctttctcttttcactattcagttttgagttgtcaacattattgttccagtattgattttggatgctcaatttgcacgtaaagATGCTGAGAGATGCAGAAAATGCAAAGTTTGGATTGAAAGCACAAGGGAAAGCTAGCGGCTTTAAAGAAAATGAG
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