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...ctttgtttaaatgtttataagtcaaaactccacctatgagcgttttatcgttttaataaccttgaaatttagagagcttcattttttttgttcctaccagGATCTTGATTTACGGTGTGAAGAGCTAATCAAAGAAGAGTTTGGCGCAGATTGCAATTTTGATGTTCATGATGCTATAAAGAAGTTAGAGAAGCTTAGCA
species | Zea mays |
transcript | GRMZM2G011136_T01 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TCATAATTTGTTACTACATTTTAATGGAGCAGGGAAAAGCCACTATACAA GATCTTGATTTACGGTGTGAAGAGCTAATCAAAGAAGAGTTTGGCGCAGATEST: gi|71767790|gb|DR965727.1|DR965727
genomic: TCATAATTTGTTACTACATTTTAATGGAGCAGGGAAAAGCCACTATACAAgtaagtatag ... ttcctaccagGATCTTGATTTACGGTGTGAAGAGCTAATCAAAGAAGAGTTTGGCGCAGAT
EST: TCATAATTTGTTACTACATTTTAATGGAGCAGGGAAAAGCCACTATACAA GATCTTGATTTACGGTGTGAAGAGCTAATCAAAGAAGAGTTTGGCGCAGATEST: gi|5871568|gb|AW018039.1|AW018039
genomic: TCATAATTTGTTACTACATTTTAATGGAGCAGGGAAAAGCCACTATACAAgtaagtatag ... ttcctaccagGATCTTGATTTACGGTGTGAAGAGCTAATCAAAGAAGAGTTTGGCGCAGAT
EST: TCATAATTTGTTACTACATTTTAATGGAGCAGGGAAAAGCCACTATACAA GATCTTGATTTACGGTGTGAAGAGCTAATCAAAGAAGAGTTTGGCGCAGATEST: gi|5871570|gb|AW018041.1|AW018041
genomic: TCATAATTTGTTACTACATTTTAATGGAGCAGGGAAAAGCCACTATACAAgtaagtatag ... ttcctaccagGATCTTGATTTACGGTGTGAAGAGCTAATCAAAGAAGAGTTTGGCGCAGAT
EST: CATAATTTGTTACTACATTTTAATGGAGCAGGGAAAAGCCACTATACAA GATCTTGATTTACGGTGTGAAGAGCTAATCAAAGAAGAGTTTGGCGCAGATEST: gi|32850036|gb|CD989717.1|CD989717
genomic: CATAATTTGTTACTACATTTTAATGGAGCAGGGAAAAGCCACTATACAAgtaagtatag ... ttcctaccagGATCTTGATTTACGGTGTGAAGAGCTAATCAAAGAAGAGTTTGGCGCAGAT
EST: TCATAATTTGTTACTACATTTTAATGGAGCAGGGAAAAGCCACTATACAA GATCTTGATTTACGGTGTGAAGAGCTAATCAAAGAAGAGTTTGGCGCAGAGEST: gi|40303291|gb|CK347678.1|CK347678
genomic: TCATAATTTGTTACTACATTTTAATGGAGCAGGGAAAAGCCACTATACAAgtaagtatag ... ttcctaccagGATCTTGATTTACGGTGTGAAGAGCTAATCAAAGAAGAGTTTGGCGCAGAT
EST: TCATAATTTGTTACTACATTTTAATGGAGCAGGGAAAAGCCACTATACAA GATCTTGATTTACGGTGTGAAGAGCTAATCAAAGAAGAGTTTGGCGCAGATEST: gi|6031446|gb|AW076348.1|AW076348
genomic: TCATAATTTGTTACTACATTTTAATGGAGCAGGGAAAAGCCACTATACAAgtaagtatag ... ttcctaccagGATCTTGATTTACGGTGTGAAGAGCTAATCAAAGAAGAGTTTGGCGCAGAT
EST: TCATAATTTGTTACTACATTTTAATGGAGCAGGGAAAAGCCACTATACAA GATCTTGATTTACGGTGTGAAGAGCTAATCAAAGAAGAGTTTGGCGCAGATEST: gi|32839351|gb|CD979032.1|CD979032
genomic: TCATAATTTGTTACTACATTTTAATGGAGCAGGGAAAAGCCACTATACAAgtaagtatag ... ttcctaccagGATCTTGATTTACGGTGTGAAGAGCTAATCAAAGAAGAGTTTGGCGCAGAT
EST: TCATAATTTGTTACTACATTTTAATGGAGCAGGGAAAAGCCACTATACAA GATCTTGATTTACGGTGTGAAGAGCTAATCAAAGAAGAGTTTGGCGCAGAGEST: gi|71445897|gb|DR826947.1|DR826947
genomic: TCATAATTTGTTACTACATTTTAATGGAGCAGGGAAAAGCCACTATACAAgtaagtatag ... ttcctaccagGATCTTGATTTACGGTGTGAAGAGCTAATCAAAGAAGAGTTTGGCGCAGAT
EST: TCATAATTTGTTACTACATTTTAATGGAGCAGGGAAAAGCCACTATACAA GATCTTGATTTACGGTGTGAAGAGCTAATCAAAGAAGAGTTTGGCGCAGATEST: gi|5847013|gb|AW000092.1|AW000092
genomic: TCATAATTTGTTACTACATTTTAATGGAGCAGGGAAAAGCCACTATACAAgtaagtatag ... ttcctaccagGATCTTGATTTACGGTGTGAAGAGCTAATCAAAGAAGAGTTTGGCGCAGAT
EST: TCATAATTTGTTACTACATTTTAATGGAGCAGGGAAAAGCCNCTATACAA GATCTTGATTTACGGTGTGAAGAGCTAATCAAAGAAGAGTTTGGCGCAGATEST: gi|5770148|gb|AI973322.1|AI973322
genomic: TCATAATTTGTTACTACATTTTAATGGAGCAGGGAAAAGCCACTATACAAgtaagtatag ... ttcctaccagGATCTTGATTTACGGTGTGAAGAGCTAATCAAAGAAGAGTTTGGCGCAGAT
EST: TTTTAATGGAGCAGGGAAAAGCCGCTATNCAA GATCTTGATTTACGGTGTGAAGAGCTAATCAAAGAAGAGTTTGGCGCAGATEST: gi|5871178|gb|AW017649.1|AW017649
genomic: TTTTAATGGAGCAGGGAAAAGCCACTATACAAgtaagtatag ... ttcctaccagGATCTTGATTTACGGTGTGAAGAGCTAATCAAAGAAGAGTTTGGCGCAGAT
EST: TCATAATTTGTTACTACATTTTAATGGAGCAGGGAAAAGCCACTATACAA GATCTTGATTTACGGTGTGAAGAGCTAATCAAAGAAGAGTTTGGCGCAGAT
genomic: TCATAATTTGTTACTACATTTTAATGGAGCAGGGAAAAGCCACTATACAAgtaagtatag ... ttcctaccagGATCTTGATTTACGGTGTGAAGAGCTAATCAAAGAAGAGTTTGGCGCAGAT
tatcgttttaataaccttgaaatttagagagcttcattttttttgttcctaccagGATCTTGATTTACGGTGTGAAGAGCTAATCAAAGAAGAGTTTGGCGCAGATTGCAATTTTGATGTTCATGATGCTATAAAGAAGTTAGAGAAGCTTAGCA
taataac putative branch site (score: 315)
cttcattttttttgtt putative PPT
ttttaataaccttgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctttgtttaaatgtttataagtcaaaactccacctatgagcgttttatcgttttaataaccttgaaatttagagagcttcattttttttgttcctaccagGATCTTGATTTACGGTGTGAAGAGCTAATCAAAGAAGAGTTTGGCGCAGATTGCAATTTTGATGTTCATGATGCTATAAAGAAGTTAGAGAAGCTTAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - -ctccacc