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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggaaataagaaagcattttggtataatgattaatgcatcttcccttctctcacaaaaggtggattgatgtgtcttcatgcatttaactaagcttatttgttctctcctatcagTCAGCTAGAAAATCAGGATTTCCTGTGCTATTCGGAGATGGTTCACGCCCTGCAGTTCTGCAATCTGCTGGCATAACGTTTCCAAAAGCTATCATGGTTA

Basic information

species Zea mays
transcript GRMZM2G009715_T01
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G009715_T01 (Zea mays), 3'ss of exon 13
lower sequence: LOC_Os12g42300.1 (Oryza sativa), 3'ss of exon 14
gttggaaataagaaagcattttggtataatgattaatgcatcttcccttctctcacaaaaggtggattgatgtgtcttcatgcatttaactaagcttatttgttctctcc-tatcagTCAGCTAGAAAATCAGGATTTCCTGTGCTATTCGGAGATGGTTCACGCCCTGCAGTTCTGCAATCTGCTGGCATAACGTTTCCAAAAGCTATCATGGTTA
|||||||||||   |  |||||||||||    || |||  | || |                    || ||||    | ||| | | | |||| | | | ||||| |||| ||  ||||||||||||||||||| ||||| |||||||  ||||||||||||||||||   |||||||||||||| ||| || | | ||| |||||| ||||||| |
gttggaaataaatgaatattttggtatagaagttgatgtgtttttc--------------------ttaatgt----taatgtactcagctaaccgtgtgtgttcactccctaatagTCAGCTAGAAAATCAGGCTTTCCAGTGCTATATGGAGATGGTTCACGCCCTCTTGTTCTGCAATCTGCCGGCGTATCTTCTCCGAAAGCTGTCATGGTCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtggattgatgtgtcttcatgcatttaactaagcttatttgttctctcctatcagTCAGCTAGAAAATCAGGATTTCCTGTGCTATTCGGAGATGGTTCACGCCCTGCAGTTCTGCAATCTGCTGGCATAACGTTTCCAAAAGCTATCATGGTTA
                      atttaac  putative branch site (score: 3)
                                 cttatttgttctctcc  putative PPT
                      atttaactaa  TA-rich tract