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...aattttatttcgagttttttctcaatcggtatgcatagctgattcttgtggttggttctttgtcatgatttcttttattttggtacttgaggcgtggtagGTACAGGAGGAGGAGCCGAAGCGCCTCACGCAGCCCTGTCTACAGGGAAAGAGGAAGGGGAGGTGGATACAGCAAAAGCCCTATACGGAGCAGTTCACCC
species | Zea mays |
transcript | GRMZM2G006107_T02 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: CCTCCTAGACGGTATAGAAGCCCACCCAGAGGAAGAGTGTCATCGCCAAG GTACAGGAGGAGGAGCCGAAGCGCCTCACGCAGCCCTGTCTACAGGGAAAGEST: gi|71427166|gb|DR808216.1|DR808216
genomic: CCTCCTAGACGGTATAGAAGCCCACCCAGAGGAAGAGTGTCATCGCCAAGgtaaataaac ... ggcgtggtagGTACAGGAGGAGGAGCCGAAGCGCCTCACGCAGCCCTGTCTACAGGGAAAG
EST: CCTCCTAGACGGTATAGAAGCCCACCCAGAGGAAGAGTGTCATCGCCAAG GTACAGGAGGAGGAGCCGAAGCGCCTCACGCAGCCCTGTCTACAGGGAAAGEST: gi|71427167|gb|DR808217.1|DR808217
genomic: CCTCCTAGACGGTATAGAAGCCCACCCAGAGGAAGAGTGTCATCGCCAAGgtaaataaac ... ggcgtggtagGTACAGGAGGAGGAGCCGAAGCGCCTCACGCAGCCCTGTCTACAGGGAAAG
EST: CCTCCTAGACGGTATAGAAGCCCACCCAGAGGAAGAGTGTCATCGCCAAG GTACAGGAGGAGGAGCCGAAGCGCCTCACGCAGCCCTGTCTACAGGGAAAGEST: gi|7216421|gb|AW562543.1|AW562543
genomic: CCTCCTAGACGGTATAGAAGCCCACCCAGAGGAAGAGTGTCATCGCCAAGgtaaataaac ... ggcgtggtagGTACAGGAGGAGGAGCCGAAGCGCCTCACGCAGCCCTGTCTACAGGGAAAG
EST: CCTCCTAGACGGTATAGAAGCCCACCCAGAGGAAGAGTGTCATCGCCAAG GTACAGGAGGAGGAGCCGAAGCGCCTCACGCAGCCCTGTCTACAGGGAAAGEST: gi|31355909|gb|CD440266.1|CD440266
genomic: CCTCCTAGACGGTATAGAAGCCCACCCAGAGGAAGAGTGTCATCGCCAAGgtaaataaac ... ggcgtggtagGTACAGGAGGAGGAGCCGAAGCGCCTCACGCAGCCCTGTCTACAGGGAAAG
EST: CCTCCTAGACGGTATAGAAGCCCACCCAGAGGAAGAGTGTCATCGCCAAG GCGTGGTAGGTACAGGAGGAGGAGCCGAAGCGCCTCACGCAGCCCTGTCTAEST: gi|211523472|gb|FL473077.1|FL473077
genomic: CCTCCTAGACGGTATAGAAGCCCACCCAGAGGAAGAGTGTCATCGCCAAGgtaaataaac ... ggcgtggtagG--T---A----CAGGAGGAGGAGCCGAAGCGCCTCACGCAGCCCTGTCTA
EST: TCCTAGACGGTATAGAAGCCCACCCAGAGGAAGAGTGTCATCGCCAAG GTACAGGAGGAGGAGCCGAAGCGCCTCACGCAGCCCTGTCTACAGGGAAAG
genomic: TCCTAGACGGTATAGAAGCCCACCCAGAGGAAGAGTGTCATCGCCAAGgtaaataaac ... ggcgtggtagGTACAGGAGGAGGAGCCGAAGCGCCTCACGCAGCCCTGTCTACAGGGAAAG
ttgtggttggttctttgtcatgatttcttttattttggtacttgaggcgtggtagGTACAGGAGGAGGAGCCGAAGCGCCTCACGCAGCCCTGTCTACAGGGAAAGAGGAAGGGGAGGTGGATACAGCAAAAGCCCTATACGGAGCAGTTCACCC
atgatttcttttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aattttatttcgagttttttctcaatcggtatgcatagctgattcttgtggttggttctttgtcatgatttcttttattttggtacttgaggcgtggtagGTACAGGAGGAGGAGCCGAAGCGCCTCACGCAGCCCTGTCTACAGGGAAAGAGGAAGGGGAGGTGGATACAGCAAAAGCCCTATACGGAGCAGTTCACCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - gtatgca
- - - - - - - - - - - - - - - - - - -gctgatt
- - - - - - - - - - - - - - - - - - - - - - - -gtggttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtacttg