1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtaatttttatcttggcccttgaacgtaaacgaggatgcctttccgctgtcaatctcatgcaccctggcttttagcaaggatgtccaaaattagatgaatgctctttacttagctgtgttcaagatggacaatcaatgattttgatctttttccctaatgcagCATCCCATAAGGAGAGGACAGCGCCAGCCAAGTTGCAGAAAGATTAAACTCAATGTTTTTTTCTCACTAGTTTCTAAATGGTACAAGAGCGATAAACTGG
species | Zea mays |
transcript | GRMZM2G005308_T01 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: ACAGGCTGAGCGCAAGAGAAGAAGAGCTAACAAGAAAAGGAGATATGCAG CATCCCATAAGGAGAGGACAGCGCCAGCCAAGTTGCAGAAAGATTAAACTCEST: gi|211459691|gb|FL207478.1|FL207478
genomic: ACAGGCTGAGCGCAAGAGAAGAAGAGCTAACAAGAAAAGGAGATATGCAGgtaattttta ... cctaatgcagCATCCCATAAGGAGAGGACAGCGCCAGCCAAGTTGCAGAAAGATTAAACTC
EST: ACAGGCTGAGCGCAAGAGAAGAAGAGCTAACAAGAAAAGGAGATATGCAG CATCCCATAAGGAGAGGACAGCGCCAGCCAAGTTGCAGAAAGATTAAACTCEST: gi|24769907|gb|CA405036.1|CA405036
genomic: ACAGGCTGAGCGCAAGAGAAGAAGAGCTAACAAGAAAAGGAGATATGCAGgtaattttta ... cctaatgcagCATCCCATAAGGAGAGGACAGCGCCAGCCAAGTTGCAGAAAGATTAAACTC
EST: ACAGGCTGAGCGCAAGAGAAGAAGAGCTAACAAGAAAAGGAGATATGCAG CATCCCATAAGGAGAGGCCAGCGCCAGCCAAGTTGCAGAAAGATTAAACTCEST: gi|211183290|gb|FL434310.1|FL434310
genomic: ACAGGCTGAGCGCAAGAGAAGAAGAGCTAACAAGAAAAGGAGATATGCAGgtaattttta ... cctaatgcagCATCCCATAAGGAGAGGACAGCGCCAGCCAAGTTGCAGAAAGATTAAACTC
EST: ACAGGCTGAGCGCAAGAGAAGAAGAGCTAACAAGAAAAGGAGATATGCAG CATCCCATAAGGAGAGGACAGCGCCAGCCAAGTTGCAGAAAGATTAAACTCEST: gi|60394413|gb|DN227283.1|DN227283
genomic: ACAGGCTGAGCGCAAGAGAAGAAGAGCTAACAAGAAAAGGAGATATGCAGgtaattttta ... cctaatgcagCATCCCATAAGGAGAGGACAGCGCCAGCCAAGTTGCAGAAAGATTAAACTC
EST: ACAGGCTGAGCGCAAGAGAAGAAGAGCTAACAAGAAAAGGAGATATGCAG CATCCCATAAGGAGAGGACAGCGCCAGCCAAGTTGCAGAAAGATTAAACTCEST: gi|71764578|gb|DR962515.1|DR962515
genomic: ACAGGCTGAGCGCAAGAGAAGAAGAGCTAACAAGAAAAGGAGATATGCAGgtaattttta ... cctaatgcagCATCCCATAAGGAGAGGACAGCGCCAGCCAAGTTGCAGAAAGATTAAACTC
EST: ACAGGCTGAGCGCAAGAGAAGAAGAGCTAACAAGAAAAGGAGATATGCAG CATCCCATAAGGAGAGGACAGCGCCAGCCAAGTTGCAGAAAGATTAAACTCEST: gi|71761969|gb|DR959906.1|DR959906
genomic: ACAGGCTGAGCGCAAGAGAAGAAGAGCTAACAAGAAAAGGAGATATGCAGgtaattttta ... cctaatgcagCATCCCATAAGGAGAGGACAGCGCCAGCCAAGTTGCAGAAAGATTAAACTC
EST: ACAGGCTGAGCGCAAGAGAAGAAGAGCTAACAAGAAAAGGAGATATGCAG CATCCCATAAGGAGAGGACAGCGCCAGCCAAGTTGCAGAAAGATTAAACTCEST: gi|211183291|gb|FL434311.1|FL434311
genomic: ACAGGCTGAGCGCAAGAGAAGAAGAGCTAACAAGAAAAGGAGATATGCAGgtaattttta ... cctaatgcagCATCCCATAAGGAGAGGACAGCGCCAGCCAAGTTGCAGAAAGATTAAACTC
EST: ACAGGCTGAGCGCAAGAGAAGAAGAGCTAACAAGAAAAGGAGATATGCAG CATCCCATAAGGAGAGGACAGCGCCAGCCAAGTTGCAGAAAGATTAAACTCEST: gi|31364214|gb|CD448569.1|CD448569
genomic: ACAGGCTGAGCGCAAGAGAAGAAGAGCTAACAAGAAAAGGAGATATGCAGgtaattttta ... cctaatgcagCATCCCATAAGGAGAGGACAGCGCCAGCCAAGTTGCAGAAAGATTAAACTC
EST: ACAGGCTGAGCGCAAGAGAAGAAGAGCTAACAAGAAAAGGAGATATGCAG CATCCCATAAGGAGAGGACAGCGCCAGCCAAGTTGCAGAAAGATTAAACTCEST: gi|76011806|gb|DT938976.1|DT938976
genomic: ACAGGCTGAGCGCAAGAGAAGAAGAGCTAACAAGAAAAGGAGATATGCAGgtaattttta ... cctaatgcagCATCCCATAAGGAGAGGACAGCGCCAGCCAAGTTGCAGAAAGATTAAACTC
EST: ACAGGCTGAGCGCAAGAGAAGAAGAGCTAACAAGAAAAGGAGATATGCAG CATCCCATAAGGAGAGGACAGCGCCAGCCAAGTTGCAGAAAGATTAAACTCEST: gi|60353438|gb|DN220411.1|DN220411
genomic: ACAGGCTGAGCGCAAGAGAAGAAGAGCTAACAAGAAAAGGAGATATGCAGgtaattttta ... cctaatgcagCATCCCATAAGGAGAGGACAGCGCCAGCCAAGTTGCAGAAAGATTAAACTC
EST: ACAGGCTGAGCGCAAGAGAAGAAGAGCTAACAAGAAAAGGAGATATGCAG CATCCCATAAGGAGAGGACAGCGCCAGCCAAGTTGCAGAAAGATTAAACTCEST: gi|40303495|gb|CK347882.1|CK347882
genomic: ACAGGCTGAGCGCAAGAGAAGAAGAGCTAACAAGAAAAGGAGATATGCAGgtaattttta ... cctaatgcagCATCCCATAAGGAGAGGACAGCGCCAGCCAAGTTGCAGAAAGATTAAACTC
EST: ACAGGCTGAGCGCAAGAGAAGAAGAGCTAACAAGAAAAGGAGATATGCAG CATCCCATAAGGAGAGGACAGCGCCAGCCAAGTTGCAGAAAGATTAAACTCEST: gi|37392792|gb|CF633649.1|CF633649
genomic: ACAGGCTGAGCGCAAGAGAAGAAGAGCTAACAAGAAAAGGAGATATGCAGgtaattttta ... cctaatgcagCATCCCATAAGGAGAGGACAGCGCCAGCCAAGTTGCAGAAAGATTAAACTC
EST: ACAGGCTGAGCGCAAGAGAAGAAGAGCTAACAAGAAAAGGAGATATGCAG CATCCCATAAGGAGAGGACAGCGCCAGCCAAGTTGCAGAAAGATTAAACTC
genomic: ACAGGCTGAGCGCAAGAGAAGAAGAGCTAACAAGAAAAGGAGATATGCAGgtaattttta ... cctaatgcagCATCCCATAAGGAGAGGACAGCGCCAGCCAAGTTGCAGAAAGATTAAACTC
cttagctgtgttcaagatggacaatcaatgattttgatctttttccctaatgcagCATCCCATAAGGAGAGGACAGCGCCAGCCAAGTTGCAGAAAGATTAAACTCAATGTTTTTTTCTCACTAGTTTCTAAATGGTACAAGAGCGATAAACTGG
ccctaat putative branch site (score: 1)
ttttgatctttttccc CT-rich tract
attttgatcttttt TA-rich tract