1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
...actagtatgcattctagatcactgctgcaaagctacaaccattgttttttatgatgagattcaacgtctccagcacttaattcatcctgtaaaattttagGTTACAGAATGGCTCTCGAGTGTGCCAGAGATTCTTTGCTAAAAAAGACCATGGACAACAAAGAAAATACAG
species | Zea mays |
transcript | EF517601.1_FGT012 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: GGCTGAGAAGTTAATTAACATGAAAATTCATCCGATGACTATTATTGCAG GTTACAGAATGGCTCTCGAGTGTGCCAGAGATTCTTTGCTAAAAAAGACCAEST: gi|19821794|gb|BQ047818.1|BQ047818
genomic: GGCTGAGAAGTTAATTAACATGAAAATTCATCCGATGACTATTATTGCAGgtattacttg ... aaaattttagGTTACAGAATGGCTCTCGAGTGTGCCAGAGATTCTTTGCTAAAAAAGACCA
EST: GGCTGAGAAGTTAATTAACATGAAAATTCATCCGATGACTATTATTGCAG GTTACAGAATGGCTCTCGAGTGTGCCAGAGATTCTTTGCTAAAAAAGACCAEST: gi|17970295|gb|BM277058.1|BM277058
genomic: GGCTGAGAAGTTAATTAACATGAAAATTCATCCGATGACTATTATTGCAGgtattacttg ... aaaattttagGTTACAGAATGGCTCTCGAGTGTGCCAGAGATTCTTTGCTAAAAAAGACCA
EST: GGCTGAGAAGTTAATTAACATGAAAATTCATCCGATGACTATTATTGCAG GTTACAGAATGGCTCTCGAGGGGGCCAGGAGAATCTTTGGCTAAAAAGGACEST: gi|14191163|gb|BG833393.1|BG833393
genomic: GGCTGAGAAGTTAATTAACATGAAAATTCATCCGATGACTATTATTGCAGgtattacttg ... aaaattttagGTTACAGAATGGCTCTCGAGTGTGCCA-GAGATTCTTT-GCTAAAAAAGAC
EST: GGCTGAGAAGTTAATTAACATGAAAATTCATCCGATGACTATTATTGCAG GTTACAGAATGGCTCTCGAGTGTGCCAGACATTCTTTGCTAAAAAAGACCAEST: gi|87152447|gb|DY397236.1|DY397236
genomic: GGCTGAGAAGTTAATTAACATGAAAATTCATCCGATGACTATTATTGCAGgtattacttg ... aaaattttagGTTACAGAATGGCTCTCGAGTGTGCCAGAGATTCTTTGCTAAAAAAGACCA
EST: GGCTGAGAAGTTAATTAACATGAAAATTCATCCGATGACTATTATTGCAG GTTACAGAATGGCTCTCGAGTGTGCCAGAGATTCTTTGCTAAAAAAGACCA
genomic: GGCTGAGAAGTTAATTAACATGAAAATTCATCCGATGACTATTATTGCAGgtattacttg ... aaaattttagGTTACAGAATGGCTCTCGAGTGTGCCAGAGATTCTTTGCTAAAAAAGACCA
tttttatgatgagattcaacgtctccagcacttaattcatcctgtaaaattttagGTTACAGAATGGCTCTCGAGTGTGCCAGAGATTCTTTGCTAAAAAAGACCATGGACAACAAAGAAAATACAG
acttaat putative branch site (score: 370)
tgtaaaatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actagtatgcattctagatcactgctgcaaagctacaaccattgttttttatgatgagattcaacgtctccagcacttaattcatcctgtaaaattttagGTTACAGAATGGCTCTCGAGTGTGCCAGAGATTCTTTGCTAAAAAAGACCATGGACAACAAAGAAAATACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - -tgcattc
- - - - - - - - - - actgctg
- - - - - - - - - - - - - - - agctaca
- - - - - - - - - - - - - - - - - - - - - - - - - atgatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catcctg