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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgtacgtgcccaccctatatatcgtcccagcagctgatcatctatcgatcgccatccgggcatcgatcgacgtcgaacccgaccgggcgcctaacaccctgacccgggtgctatatcttcgtgtttgtgcagCCACAGGAGCAGAGGGGCGCTGCGAACGGGATAGCTACGACGGCGATGTCTCTGTCCAAGGCGTTCGCTCCGGCCGTGGCCGGCATCTT

Basic information

species Zea mays
transcript GRMZM5G877788_T03
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|50337159|gb|CO532285.1|CO532285
EST:     CGGCACATCGCTCCTGCAGAACAACGCTGTG                         CCACAGGAGCAGAGGGGCGCTGCGAACGGGATAGCTACGACGGCGATGTCT
genomic: CGGCACATCGCTCCTGCAGAACAACGCTGTGgtgcgtacgt ... gtttgtgcagCCACAGGAGCAGAGGGGCGCTGCGAACGGGATAGCTACGACGGCGATGTCT
EST: gi|211451241|gb|FL460010.1|FL460010
EST:     ATCACCAGAGTCACCGGCACATCGCTCCTGCAGAACAACGCTGTG                         CCMCAGGAGCARAGGGGCGCTGCGAACGGGATAGCTACGACGGCGATGTCT
genomic: ATCACCAGAGTCACCGGCACATCGCTCCTGCAGAACAACGCTGTGgtgcgtacgt ... gtttgtgcagCCACAGGAGCAGAGGGGCGCTGCGAACGGGATAGCTACGACGGCGATGTCT
EST: gi|211396502|gb|FK986087.1|FK986087
EST:     ATCACCAGAGTCACCGGCMCATCGCTCCTGCAGAACAACGCTGTG                         CCACAGGAGCAGAGGGGCGCTGCGAACGGGATAGCTACGACGGCGATGTCT
genomic: ATCACCAGAGTCACCGGCACATCGCTCCTGCAGAACAACGCTGTGgtgcgtacgt ... gtttgtgcagCCACAGGAGCAGAGGGGCGCTGCGAACGGGATAGCTACGACGGCGATGTCT
EST: gi|76926346|gb|DV170820.1|DV170820
EST:     ATCACCAGAGTCACCGGCACATCGCTCCTGCAGAACAACGCTGTG                         CCACAGGAGCAGAGGGGCGCTGCGAACGGGATAGCTACGACGGCGATGTCT
genomic: ATCACCAGAGTCACCGGCACATCGCTCCTGCAGAACAACGCTGTGgtgcgtacgt ... gtttgtgcagCCACAGGAGCAGAGGGGCGCTGCGAACGGGATAGCTACGACGGCGATGTCT
EST: gi|71427484|gb|DR808534.1|DR808534
EST:     ATCACCAGAGTCACCGGCACATCGCTCCTGCAGAACAACGCTGTG                         CCACAGGAGCAGAGGGGCGCTGCGAACGGGATAGCTACGACGGCGATGTCT
genomic: ATCACCAGAGTCACCGGCACATCGCTCCTGCAGAACAACGCTGTGgtgcgtacgt ... gtttgtgcagCCACAGGAGCAGAGGGGCGCTGCGAACGGGATAGCTACGACGGCGATGTCT
EST: gi|76018157|gb|DT945327.1|DT945327
EST:     ATCACCAGAGTCACCGGCACATCGCTCCTGCAGAACAACGCTGTG                         CCACAGGAGCAGAGGGGCGCTGCGAACGGGATAGTTACGACGGCGATGTTT
genomic: ATCACCAGAGTCACCGGCACATCGCTCCTGCAGAACAACGCTGTGgtgcgtacgt ... gtttgtgcagCCACAGGAGCAGAGGGGCGCTGCGAACGGGATAGCTACGACGGCGATGTCT
EST: gi|78123316|gb|DV541700.1|DV541700
EST:     ATCACCAGAGTCACCGGCACATCGCTCCTGCAGAACAACGCTGTG                         CCACAGGAGCAGAGGGGCGCTGCGAACGGGATAGCTACGACGGCGATGTCT
genomic: ATCACCAGAGTCACCGGCACATCGCTCCTGCAGAACAACGCTGTGgtgcgtacgt ... gtttgtgcagCCACAGGAGCAGAGGGGCGCTGCGAACGGGATAGCTACGACGGCGATGTCT
EST: gi|74243543|gb|DT651457.1|DT651457
EST:     ATCACCAGAGTCACCGGCACATCGCTCCTGCAGAACAACGCTGTG                         CCACAGGAGCAGAGGGGCGCTGCGAACGGGATAGCTACGACGGCGATGTCT
genomic: ATCACCAGAGTCACCGGCACATCGCTCCTGCAGAACAACGCTGTGgtgcgtacgt ... gtttgtgcagCCACAGGAGCAGAGGGGCGCTGCGAACGGGATAGCTACGACGGCGATGTCT
EST: gi|149077505|gb|EE166202.2|EE166202
EST:     ATCACCAGAGTCACCGGCACATCGCTCCTGCAGAACAACGCTGTG                         CCACAGGAGCAGAGGGGCGCTGCGAACGGGATAGCTACGACGGCGATGTCT
genomic: ATCACCAGAGTCACCGGCACATCGCTCCTGCAGAACAACGCTGTGgtgcgtacgt ... gtttgtgcagCCACAGGAGCAGAGGGGCGCTGCGAACGGGATAGCTACGACGGCGATGTCT
EST: gi|74233874|gb|DT641788.1|DT641788
EST:     ATCACCAGAGTCACCGGCACATCGCTCCTGCAGAACAACGCTGTG                         CCACAGGAGCAGAGGGGCGCTGCGAACGGGATAGCTACGACGGCGATGTCT
genomic: ATCACCAGAGTCACCGGCACATCGCTCCTGCAGAACAACGCTGTGgtgcgtacgt ... gtttgtgcagCCACAGGAGCAGAGGGGCGCTGCGAACGGGATAGCTACGACGGCGATGTCT
EST: gi|94474394|gb|EB703352.1|EB703352
EST:     ATCACCAGAGTCACCGGCACATCGCTCCTGCAGAACAACGCTGTG                         CCACAGGAGCAGAGGGGCGCTGCGAACGGGATAGCTACGACGGCGATGTCT
genomic: ATCACCAGAGTCACCGGCACATCGCTCCTGCAGAACAACGCTGTGgtgcgtacgt ... gtttgtgcagCCACAGGAGCAGAGGGGCGCTGCGAACGGGATAGCTACGACGGCGATGTCT
EST: gi|71428520|gb|DR809570.1|DR809570
EST:     ATCACCAGAGTCACCGGCACATCGCTCCTGCAGAACAACGCTGTG                         CCACAGGAGCAGAGGGGCGCTGCGAACGGGATAGCTACGACGGCGATGTCT
genomic: ATCACCAGAGTCACCGGCACATCGCTCCTGCAGAACAACGCTGTGgtgcgtacgt ... gtttgtgcagCCACAGGAGCAGAGGGGCGCTGCGAACGGGATAGCTACGACGGCGATGTCT
EST: gi|78084898|gb|DV513291.1|DV513291
EST:     ATCACCAGAGTCACCGGCACATCGCTCCTGCAGAACAACGCTGTG                         CCACAGGAGCAGAGGGGCGCTGCGAACGGGATAGGTACGACGGCGATGTCT
genomic: ATCACCAGAGTCACCGGCACATCGCTCCTGCAGAACAACGCTGTGgtgcgtacgt ... gtttgtgcagCCACAGGAGCAGAGGGGCGCTGCGAACGGGATAGCTACGACGGCGATGTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cccgaccgggcgcctaacaccctgacccgggtgctatatcttcgtgtttgtgcagCCACAGGAGCAGAGGGGCGCTGCGAACGGGATAGCTACGACGGCGATGTCTCTGTCCAAGGCGTTCGCTCCGGCCGTGGCCGGCATCTT
                                  tatatctt  TA-rich tract