1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtaaatgtcacctttgtatggttacacctcatacaaaacacgtggtttattcttttttgagttaataacccctttttttcctcacagGGATGGATAATGTCTGAATCACTTCTTAACCCGGGACGAGCAAGATTGTGTGGAGCAGTACCACAATGATCCAAGCCTTTTTCGTTTTTCATGATGAAGA
species | Zea mays |
transcript | GRMZM5G833124_T01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: AGATCGTTATGTCATCTTATGGAGTTTTCAAGAAGAAAGCAAGAGAACAG GGATGGATAATGTCTGAATCACTTCTTAACCCGGGACGAGCAAGATTGTGTEST: gi|31363448|gb|CD447805.1|CD447805
genomic: AGATCGTTATGTCATCTTATGGAGTTTTCAAGAAGAAAGCAAGAGAACAGgtaaatgtca ... ttcctcacagGGATGGATAATGTCTGAATCACTTCTTAACCCGGGACGAGCAAGATTGTGT
EST: AGATCGTTATGTCATCTTATGGAGTTTTCAAGAAGAAAGCAAGAGAACAG GGATGGATAATGTCTGAATCACTTCTTAACCCGGGACGAGCAAGATTGTGTEST: gi|32942706|gb|CF047525.1|CF047525
genomic: AGATCGTTATGTCATCTTATGGAGTTTTCAAGAAGAAAGCAAGAGAACAGgtaaatgtca ... ttcctcacagGGATGGATAATGTCTGAATCACTTCTTAACCCGGGACGAGCAAGATTGTGT
EST: AGATCGTTATGTCATCTTATGGAGTTTTCAAGAAGAAAGCAAGAGAACAG GGATGGATAATGTCTGAATCACTTCTTAACCCGGGACGAGCAAGATTGTGTEST: gi|17931896|gb|BM268856.1|BM268856
genomic: AGATCGTTATGTCATCTTATGGAGTTTTCAAGAAGAAAGCAAGAGAACAGgtaaatgtca ... ttcctcacagGGATGGATAATGTCTGAATCACTTCTTAACCCGGGACGAGCAAGATTGTGT
EST: AGATCGTTATGTCATCTTATGGAGTTTTCAAGAAGAAAGCAAGAGAACAG GGATGGATAATGTCTGAATCACTTCTTAACCCGGGACGAGCAAGATTGTGTEST: gi|84977310|gb|DW475732.1|DW475732
genomic: AGATCGTTATGTCATCTTATGGAGTTTTCAAGAAGAAAGCAAGAGAACAGgtaaatgtca ... ttcctcacagGGATGGATAATGTCTGAATCACTTCTTAACCCGGGACGAGCAAGATTGTGT
EST: AGATCGTTATGTCATCTTATGGAGTTTTCAAGAAGAAAGCAAGAGAACAG GGATGGATAATGTCTGAATCACTTCTTAACCCGGGACGAGCAAGATTGTGTEST: gi|37374924|gb|CF623866.1|CF623866
genomic: AGATCGTTATGTCATCTTATGGAGTTTTCAAGAAGAAAGCAAGAGAACAGgtaaatgtca ... ttcctcacagGGATGGATAATGTCTGAATCACTTCTTAACCCGGGACGAGCAAGATTGTGT
EST: GAAGAAAGCAAGAGAACAG GGATGGATAATGTCTGAATCACTTCTTAACCCGGGACGAGCAAGATTGTGTEST: gi|93281684|gb|EB673948.1|EB673948
genomic: GAAGAAAGCAAGAGAACAGgtaaatgtca ... ttcctcacagGGATGGATAATGTCTGAATCACTTCTTAACCCGGGACGAGCAAGATTGTGT
EST: AGATCGTTATGTCATCTTATGGAGTTTTCAAGAAGAAAGCAAGAGAACAG GGATGGATAATGTCTGAATCACTTCTTAACCCGGGACGAGCAAGATTGTGTEST: gi|76016960|gb|DT944130.1|DT944130
genomic: AGATCGTTATGTCATCTTATGGAGTTTTCAAGAAGAAAGCAAGAGAACAGgtaaatgtca ... ttcctcacagGGATGGATAATGTCTGAATCACTTCTTAACCCGGGACGAGCAAGATTGTGT
EST: AGATCGTTATGTCATCTTATGGAGTTTTCAAGAAGAAAGCAAGAGAACAG GGATGGATAATGTCTGAATCACTTCTTAACCCGGGACGAGCAAGATTGTGT
genomic: AGATCGTTATGTCATCTTATGGAGTTTTCAAGAAGAAAGCAAGAGAACAGgtaaatgtca ... ttcctcacagGGATGGATAATGTCTGAATCACTTCTTAACCCGGGACGAGCAAGATTGTGT
acaaaacacgtggtttattcttttttgagttaataacccctttttttcctcacagGGATGGATAATGTCTGAATCACTTCTTAACCCGGGACGAGCAAGATTGTGTGGAGCAGTACCACAATGATCCAAGCCTTTTTCGTTTTTCATGATGAAGA
taataac putative branch site (score: 218)
cccctttttttcctca CT-rich tract
tttattcttttttgag TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatgtcacctttgtatggttacacctcatacaaaacacgtggtttattcttttttgagttaataacccctttttttcctcacagGGATGGATAATGTCTGAATCACTTCTTAACCCGGGACGAGCAAGATTGTGTGGAGCAGTACCACAATGATCCAAGCCTTTTTCGTTTTTCATGATGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA