1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
gtaatatttcatgttatgatgttattatttattactctgcatattactaagcaactaattgtatgcctttgtgttcttgtttcttgcagATTGAGGCACTATTCGATTTAATTAAGGGGCTGATAAAGGATATGGATGGGGCTCAAGATGATGAA
species | Zea mays |
transcript | GRMZM5G825524_T02 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TTCAAAGCATAATGAAAAACACAACCTGCATATCTACTTCTGACAAG ATTGAGGCACTATTCGATTTAATTAAGGGGGCTGATAAAGGATATGGATGGEST: gi|31356431|gb|CD440788.1|CD440788
genomic: TTCAAAGCATAATGAAAAACACAACCTGCATATCTACTTCTGACAAGgtaatatttc ... tttcttgcagATTGAGGCACTATTCGATTTAATTAA-GGGGCTGATAAAGGATATGGATGG
EST: TAATTCAAAGCATAATGAAAAACACAACCTGCATATCTACTTCTGACAAG ATTGAGGCACTATTCGATTTAATTAAGGGGCTGATAAAGGATATGGATGGG
genomic: TAATTCAAAGCATAATGAAAAACACAACCTGCATATCTACTTCTGACAAGgtaatatttc ... tttcttgcagATTGAGGCACTATTCGATTTAATTAAGGGGCTGATAAAGGATATGGATGGG
ctctgcatattactaagcaactaattgtatgcctttgtgttcttgtttcttgcagATTGAGGCACTATTCGATTTAATTAAGGGGCTGATAAAGGATATGGATGGGGCTCAAGATGATGAA
aactaat putative branch site (score: 565)
tgttcttgtttctt putative PPT
atattactaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatatttcatgttatgatgttattatttattactctgcatattactaagcaactaattgtatgcctttgtgttcttgtttcttgcagATTGAGGCACTATTCGATTTAATTAAGGGGCTGATAAAGGATATGGATGGGGCTCAAGATGATGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG