1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
gtaagaaaaaaattatttgcttgcctatttgcatcccggtggtgcacaatttttctcaatcatcttctatgttacagAACAGATTTTGAAGCTGGTGTACAAGATTTCAAAGAGCGATTGACCTATTATGAAAAG
species | Zea mays |
transcript | GRMZM5G824405_T01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GAGAGAAATATACGATTGAAAGTTCAACAAAGTCCTGATTATGCAGAGCA AACAGATTTTGAAGCTGGTGTACAAGATTTCAAAGAGCGATTGGAC-TATTEST: gi|211189269|gb|FL030572.1|FL030572
genomic: GAGAGAAATATACGATTGAAAGTTCAACAAAGTCCTGATTATGCAGAGCAgtaagaaaaa ... tatgttacagAACAGATTTTGAAGCTGGTGTACAAGATTTCAAAGAGCGATTG-ACCTATT
EST: TACGATTGAAAGTTCAACAAAGTCCTGATTATGCAGAGCA AACAGATTTTGAAGCTGGTGTACAAGATTTCAAAGAGCGATTGGCCTATTAEST: gi|19437252|gb|BM953662.1|BM953662
genomic: TACGATTGAAAGTTCAACAAAGTCCTGATTATGCAGAGCAgtaagaaaaa ... tatgttacagAACAGATTTTGAAGCTGGTGTACAAGATTTCAAAGAGCGATTGACCTATTA
EST: GAGAGAAATATACGATTGAAAGTTCAACAAAGTCCTGATTATGCAGAGCA AACAGATTTTGAAGCTGGTGTACAAGATTTCAAAGAGCGATTGACCTATTAEST: gi|5895775|gb|AW037021.1|AW037021
genomic: GAGAGAAATATACGATTGAAAGTTCAACAAAGTCCTGATTATGCAGAGCAgtaagaaaaa ... tatgttacagAACAGATTTTGAAGCTGGTGTACAAGATTTCAAAGAGCGATTGACCTATTA
EST: GAGAGAAATATACGATTGAAAGTTCAACAAAGTCCTGATTATGCAGAGCA AACAGATTTTGAAGCTGGTGTACAAGATTTCAAAGAGCGATTGACCTATTAEST: gi|22491067|gb|BU050990.1|BU050990
genomic: GAGAGAAATATACGATTGAAAGTTCAACAAAGTCCTGATTATGCAGAGCAgtaagaaaaa ... tatgttacagAACAGATTTTGAAGCTGGTGTACAAGATTTCAAAGAGCGATTGACCTATTA
EST: GAGAGAAATATACGATTGAAAGTTCAACAAAGTCCTGATTATGCAGAGCA AACAGATTTTGAAGCTGGTGTACAAGATTTCAAAGAGCGATEST: gi|67010650|gb|CO439399.1|CO439399
genomic: GAGAGAAATATACGATTGAAAGTTCAACAAAGTCCTGATTATGCAGAGCAgtaagaaaaa ... tatgttacagAACAGATTTTGAAGCTGGTGTACAAGATTTCAAAGAGCGAT
EST: GAGAGAAATATACGATTGAAAGTTCAACAAAGTCCTGATTATGCAGAGCA AACAGATTTTGAAGCTGGTGTACAAGATTTCAAAGAGCGATTGGCCTATTA
genomic: GAGAGAAATATACGATTGAAAGTTCAACAAAGTCCTGATTATGCAGAGCAgtaagaaaaa ... tatgttacagAACAGATTTTGAAGCTGGTGTACAAGATTTCAAAGAGCGATTGACCTATTA
gcctatttgcatcccggtggtgcacaatttttctcaatcatcttctatgttacagAACAGATTTTGAAGCTGGTGTACAAGATTTCAAAGAGCGATTGACCTATTATGAAAAG
tcatcttct CT-rich tract
acaattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaaaaaaattatttgcttgcctatttgcatcccggtggtgcacaatttttctcaatcatcttctatgttacagAACAGATTTTGAAGCTGGTGTACAAGATTTCAAAGAGCGATTGACCTATTATGAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG