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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtgaactacctatttgttatgatgggctagtgattgatttgtgtgtatatatgtttttactctgggactgcttgtggataattttttgaaagtaggttgttgagttaccttctttcattctatgcgcagGTATCGTCTGCACCGGAAGATGCTCCTACAGAAAATCATGGACGCACTGGACATATATCAGGATAGAATTCTGTTCTAGCTGTAGAGGCGGCGCTACCTG

Basic information

species Zea mays
transcript GRMZM5G807767_T04
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G807767_T03 (Zea mays), 3'ss of exon 11
lower sequence: LOC_Os05g50980.1 (Oryza sativa), 3'ss of exon 10
gtaggtgaactacctatttgttatgatgggctagtgattgatttgtgtgtatatatgtttttactctgggactgcttgtggataattttttgaaagtaggttgttgagttaccttctttcattctatgcgcagGTATCGTCTGCACCGGAAGATGCTCCTACAGAAAATCATGGACGCACTGGACATATATCAGGATAGAATTCTGTTCTAGCT-GTAGAGGCGGCGCTACCTG
                     |||| ||  ||||  | |  |||     ||     |   || |||       | || ||  |   ||| |   | | | ||||| |   || || ||||  |  ||  |||| ||||| || ||||||||| ||||||| ||||||||||| || ||| |||| || || ||||||| |||| |||| ||| | |  |    |||   | || 
--------------------gtatg-tgaactagcaagttgttt-----ta-----gccattgctcccatgaagtttatgtttg--tttgtaccacttgcttgttaa--cacattttttctgttgatatgcagATATCGGCTACACCGGAAGCTGCTCCTGCAGAAAATCATCGATGCATTGGATATCTACCAGGATAAAATTTTGTTTTAGATAGCTGTATAGGCAACAACT-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211112381|gb|FL446192.1|FL446192
EST:     ATTCCGATGCGCATATCAGCAAAACCCGAGAAATTGCGATCAA                         GTATCGTCTGCACCGGAAGATGCTCCTACAGAAAATCATGGACGCACTGGA
genomic: ATTCCGATGCGCATATCAGCAAAACCCGAGAAATTGCGATCAAgtaggtgaac ... ctatgcgcagGTATCGTCTGCACCGGAAGATGCTCCTACAGAAAATCATGGACGCACTGGA
EST: gi|108953379|gb|EC364711.1|EC364711
EST:     ATTCCGATGCGCATATCAGCAAAACCCGAGAAATTGCGATCAA                         GTATCGTCTGCACCGGAAGATGCTCCTACAG
genomic: ATTCCGATGCGCATATCAGCAAAACCCGAGAAATTGCGATCAAgtaggtgaac ... ctatgcgcagGTATCGTCTGCACCGGAAGATGCTCCTACAG
EST: gi|13557816|gb|BG549172.1|BG549172
EST:     ATTCCGATGCGCATATCAGCAAAACCCGAGAAATTGCGATCAA                         GTATCGTCTGCACCGGAAGATGCTCCTACAGAAAATCATGGACGCACTGGA
genomic: ATTCCGATGCGCATATCAGCAAAACCCGAGAAATTGCGATCAAgtaggtgaac ... ctatgcgcagGTATCGTCTGCACCGGAAGATGCTCCTACAGAAAATCATGGACGCACTGGA
EST: gi|86471327|gb|DY237697.1|DY237697
EST:     ATATCAGCAAACCCCGAGAAATTGCGATCAA                         GTATCGTTTGCACCGGAAGATGCTCCTACAGAAAATCATGGACGCACTGGA
genomic: ATATCAGCAAAACCCGAGAAATTGCGATCAAgtaggtgaac ... ctatgcgcagGTATCGTCTGCACCGGAAGATGCTCCTACAGAAAATCATGGACGCACTGGA
EST: gi|32929396|gb|CF034208.1|CF034208
EST:     ATTCCGATGCGCATATCAGCAAAACCCGAGAAATTGCGATCAA                         GTATCGTCTGCACCGGAAGATGCTCCTACAGAAAATCATGGACACACTGGA
genomic: ATTCCGATGCGCATATCAGCAAAACCCGAGAAATTGCGATCAAgtaggtgaac ... ctatgcgcagGTATCGTCTGCACCGGAAGATGCTCCTACAGAAAATCATGGACGCACTGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggataattttttgaaagtaggttgttgagttaccttctttcattctatgcgcagGTATCGTCTGCACCGGAAGATGCTCCTACAGAAAATCATGGACGCACTGGACATATATCAGGATAGAATTCTGTTCTAGCTGTAGAGGCGGCGCTACCTG
                              ttaccttctttcattc  CT-rich tract
     aattttttgaaagta  TA-rich tract