1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...ttattatctttaaatctttaatttgtcatacatcatagctagtagcttgttaaattcatcattttttctattgatggtcattttctttctcgtcttttagGAGAAGGTTCTTTGTAGGATTTGTTATGAGGGGGAGATATGCATGGTGCTACTTCCCTGCCGGCACAGAACTTTATGCAA
species | Zea mays |
transcript | GRMZM2G704032_T01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: AATCTGAAATCACCAAGTGTACCAAACAGGAATATGAAAGGCTTCAAAAT GAGAAGGTTCTTTGTAGGATTTGTTATGAGGGGGAGATATGCATGGTGCTAEST: gi|149000343|gb|EE037503.2|EE037503
genomic: AATCTGAAATCACCAAGTGTACCAAACAGGAATATGAAAGGCTTCAAAATgtagccccct ... cgtcttttagGAGAAGGTTCTTTGTAGGATTTGTTATGAGGGGGAGATATGCATGGTGCTA
EST: AATCTGAAATCACCAAGTGTACCAAACAGGAATATGAAAGGCTTCAAAAT GAGAAGGTTCTTTGTAGGATTTGTTATGAGGGGGAGATATGCATGGTGCTAEST: gi|149107037|gb|EE188931.2|EE188931
genomic: AATCTGAAATCACCAAGTGTACCAAACAGGAATATGAAAGGCTTCAAAATgtagccccct ... cgtcttttagGAGAAGGTTCTTTGTAGGATTTGTTATGAGGGGGAGATATGCATGGTGCTA
EST: AATCTGAAATCACCAAGTGTACCAAACAGGAATATGAAAGGCTTCAAAAT GAGAAGGTTCTTTGTAGGATTTGTTATGAGGGGGAGATATGCATGGTGCTAEST: gi|6022166|gb|AW067094.1|AW067094
genomic: AATCTGAAATCACCAAGTGTACCAAACAGGAATATGAAAGGCTTCAAAATgtagccccct ... cgtcttttagGAGAAGGTTCTTTGTAGGATTTGTTATGAGGGGGAGATATGCATGGTGCTA
EST: AAATCACCAAGTGTACCAAACAGGAATATGAAAGGCTTCAAAAT GAGAAGGTTCTTTGTAGGATTTGTTATGAGGGGGAGATATGCATGGTGCTAEST: gi|110944040|gb|EE164197.1|EE164197
genomic: AAATCACCAAGTGTACCAAACAGGAATATGAAAGGCTTCAAAATgtagccccct ... cgtcttttagGAGAAGGTTCTTTGTAGGATTTGTTATGAGGGGGAGATATGCATGGTGCTA
EST: AATCTGAAATCACCAAGTGTACCAAACAGGAATATGAAAGGCTTCAAAAT GAGAAGGTTCTTTGTAGGATTTGTTATGAGGGGGAGATATGCATGGTGCTAEST: gi|78023713|gb|DV492100.1|DV492100
genomic: AATCTGAAATCACCAAGTGTACCAAACAGGAATATGAAAGGCTTCAAAATgtagccccct ... cgtcttttagGAGAAGGTTCTTTGTAGGATTTGTTATGAGGGGGAGATATGCATGGTGCTA
EST: AATCTGAAATCACCAAGTGTACCAAACAGGAATATGAAAGGCTTCAAAAT GAGAAGGTTCTTTGTAGGATTTGTTATGAGGGGGAGATATGCATGGTGCTAEST: gi|18659625|gb|BM500436.1|BM500436
genomic: AATCTGAAATCACCAAGTGTACCAAACAGGAATATGAAAGGCTTCAAAATgtagccccct ... cgtcttttagGAGAAGGTTCTTTGTAGGATTTGTTATGAGGGGGAGATATGCATGGTGCTA
EST: GGAATATGAAAGGCTTCAAAAT GAGAAGGTTCTTTGTAGGATTTGTTATGAGGGGGAGATATGCATGGTGCTAEST: gi|166675211|gb|EG212155.1|EG212155
genomic: GGAATATGAAAGGCTTCAAAATgtagccccct ... cgtcttttagGAGAAGGTTCTTTGTAGGATTTGTTATGAGGGGGAGATATGCATGGTGCTA
EST: AATCTGAAATCACCAAGTGTACCAAACAGGAATATGAAAGGCTTCAAAAT GAGAAGGTTCTTTGTAGGATTTGTTATEST: gi|149083045|gb|EE172299.2|EE172299
genomic: AATCTGAAATCACCAAGTGTACCAAACAGGAATATGAAAGGCTTCAAAATgtagccccct ... cgtcttttagGAGAAGGTTCTTTGTAGGATTTGTTAT
EST: CAAGTGTCCCAAACAGGAATATGAAAGGCTTCAAAAT GAGAAGGTTCTTTGTAGGATTTGTTATGAGGGGGAGATATGCATGGTGCTAEST: gi|148975093|gb|EE025660.2|EE025660
genomic: CAAGTGTACCAAACAGGAATATGAAAGGCTTCAAAATgtagccccct ... cgtcttttagGAGAAGGTTCTTTGTAGGATTTGTTATGAGGGGGAGATATGCATGGTGCTA
EST: AATCTGAAATCACCAAGTGTACCAAACAGGAATATGAAAGGCTTCAAAAT GAGAAGGTTCTTTGTAGGATTTGTTATGAGGGGGAGATATGCATGGTGTTAEST: gi|60356237|gb|DN223210.1|DN223210
genomic: AATCTGAAATCACCAAGTGTACCAAACAGGAATATGAAAGGCTTCAAAATgtagccccct ... cgtcttttagGAGAAGGTTCTTTGTAGGATTTGTTATGAGGGGGAGATATGCATGGTGCTA
EST: AATCTGAAATCACCAAGTGTACCAAACAGGAATATGAAAGGCTTCAAAAT GAGAAGGTTCTTTGTAGGATTTGTTATGAGGGGGAGATATGCATGGTGCTA
genomic: AATCTGAAATCACCAAGTGTACCAAACAGGAATATGAAAGGCTTCAAAATgtagccccct ... cgtcttttagGAGAAGGTTCTTTGTAGGATTTGTTATGAGGGGGAGATATGCATGGTGCTA
cttgttaaattcatcattttttctattgatggtcattttctttctcgtcttttagGAGAAGGTTCTTTGTAGGATTTGTTATGAGGGGGAGATATGCATGGTGCTACTTCCCTGCCGGCACAGAACTTTATGCAA
tattgat putative branch site (score: 3)
tcattttctttctcgt putative PPT
taaattcatcattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttattatctttaaatctttaatttgtcatacatcatagctagtagcttgttaaattcatcattttttctattgatggtcattttctttctcgtcttttagGAGAAGGTTCTTTGTAGGATTTGTTATGAGGGGGAGATATGCATGGTGCTACTTCCCTGCCGGCACAGAACTTTATGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - catacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -attgatg