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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactccctcgcttgccagagtcaccatagcacaccaaatgagtactacgtgcttgttggcttgttgcatccatggttcttagtcacaacatctatcatcaaaggaaaccaaattgagcaaaatttgtttgtcatatgcatgtttccggcaccaacattcaccacgtcttcatcctgagcagGTTAACATGTCGCTGATAGTCCATGATAGCGATGCAAAGGAACTCGTAGAAGCCCTTCATCAGGCGTTCTTTAAAGACGATGTCCTGGCACAAGTCGAAG

Basic information

species Zea mays
transcript GRMZM2G700866_T01
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G700866_T02 (Zea mays), 3'ss of exon 13
lower sequence: LOC_Os01g70300.1 (Oryza sativa), 3'ss of exon 12
gtactccctcgcttgccagagtcaccatagcacaccaaatgagtactacgtgcttgttggcttgttgcatccatggttcttagtcacaacatctatcatcaaaggaaaccaaattgagcaaaatttgtt-tgtcatatgcatgtttccggcaccaacattcaccacgtcttcatcctgagcagGTTAACATGTCGCTGATAGTCCATGATAGCGATGCAAAGGAACTCGTAGAAGCCCTTCATCAGGCGTTCTTTAAAGACGATGTCCTGGCACAAGTCGAAG
                                                                                             ||       |  | ||     |   || | ||      |   ||| |||||    |   |  | ||   | | ||   |  | | | |||||||||||||| ||||| || ||||||||||| |||||| |   | || | ||||| || |||||||||||  | |||||||||||| || ||||||| |
--------------------------------------------------------------------------------------------gtagtccttgataagactgttct---cacacttgacaacgctgtatccatgtcctggttcctgatat---caatgttgccgccttcaacagGTTAACATGTCTCTGATTGTTCATGATAGCGAGGCAAAGCAGTGCATAAAGGCCCTCCACCAGGCGTTCTTCGAGGACGATGTCCTGACAGAAGTCGAGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgtcatatgcatgtttccggcaccaacattcaccacgtcttcatcctgagcagGTTAACATGTCGCTGATAGTCCATGATAGCGATGCAAAGGAACTCGTAGAAGCCCTTCATCAGGCGTTCTTTAAAGACGATGTCCTGGCACAAGTCGAAG
                                       tcttcatcct  CT-rich tract