1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
gtcagcgtgcatagcacattcttgtttgtgtatatggattgtcatgatgtcatatgtaatatttggaaatttgtgtttcagAAGCTCATTAGAGCTAGCAGTGTCGAGAAATGGGCAGTAGTAAACTTTTCTGCACGATGCAATGTCCGGGATCTTGTCCGTGATCTCATCAAGTGTGGAG
species | Zea mays |
transcript | GRMZM2G589579_T01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: ACGGAGAAGACATTTTTACGCGCAATGGCAGATGGAATTTCAATAATAAG AAGCTCATTAGAGCTAGCAGTGTCGAGAAATGGGCAGTAGTAAACTTTTCTEST: gi|32931483|gb|CF036295.1|CF036295
genomic: ACGGAGAAGACATTTTTACGCGCAATGGCAGATGGAATTTCAATAATAAGgtcagcgtgc ... tgtgtttcagAAGCTCATTAGAGCTAGCAGTGTCGAGAAATGGGCAGTAGTAAACTTTTCT
EST: ACGGAGAAGACATTTTTACGCGCAATGGCAGATGGAATTTCAATAATAAG AAGCTCATTAGAGCTAGCAGTGTCGAGAAATGGGCAGTAGTAAACTTTTCTEST: gi|32931644|gb|CF036456.1|CF036456
genomic: ACGGAGAAGACATTTTTACGCGCAATGGCAGATGGAATTTCAATAATAAGgtcagcgtgc ... tgtgtttcagAAGCTCATTAGAGCTAGCAGTGTCGAGAAATGGGCAGTAGTAAACTTTTCT
EST: ACGGAGAAGACATTTTTACGCGCAATGGCAGATGGAATTTCAATAATAAG AAGCTCATTAGAGCTAGCAGTGTCGAGAAATGGGCAGTAGTAAACTTTTCTEST: gi|32931663|gb|CF036475.1|CF036475
genomic: ACGGAGAAGACATTTTTACGCGCAATGGCAGATGGAATTTCAATAATAAGgtcagcgtgc ... tgtgtttcagAAGCTCATTAGAGCTAGCAGTGTCGAGAAATGGGCAGTAGTAAACTTTTCT
EST: ACGGAGAAGACATTTTTACGCGCAATGGCAGATGGAATTTCAATAATAAG AAGCTCATTAGAGCTAGCAGTGTCGAGAAATGGGCAGTAGTAAACTTTTCTEST: gi|211048006|gb|FL383287.1|FL383287
genomic: ACGGAGAAGACATTTTTACGCGCAATGGCAGATGGAATTTCAATAATAAGgtcagcgtgc ... tgtgtttcagAAGCTCATTAGAGCTAGCAGTGTCGAGAAATGGGCAGTAGTAAACTTTTCT
EST: ACGGAGAAGACATTTTTACGCGCAATGGCAGATGGAATTTCAATAATAAG AAGCTCATTAGAGCTAGCAGTGTCGAGAAATGGGCAGTAGTAAACTTTTCTEST: gi|32931786|gb|CF036598.1|CF036598
genomic: ACGGAGAAGACATTTTTACGCGCAATGGCAGATGGAATTTCAATAATAAGgtcagcgtgc ... tgtgtttcagAAGCTCATTAGAGCTAGCAGTGTCGAGAAATGGGCAGTAGTAAACTTTTCT
EST: ACGGAGAAGACATTTTTACGCGCAATGGCAGATGGAATTTCAATAATAAG AAGCTCATTAGAGCTAGCAGTGTCGAGAAATGGGCAGTAGTAAACTTTTCT
genomic: ACGGAGAAGACATTTTTACGCGCAATGGCAGATGGAATTTCAATAATAAGgtcagcgtgc ... tgtgtttcagAAGCTCATTAGAGCTAGCAGTGTCGAGAAATGGGCAGTAGTAAACTTTTCT
tgtgtatatggattgtcatgatgtcatatgtaatatttggaaatttgtgtttcagAAGCTCATTAGAGCTAGCAGTGTCGAGAAATGGGCAGTAGTAAACTTTTCTGCACGATGCAATGTCCGGGATCTTGTCCGTGATCTCATCAAGTGTGGAG
atatgtaatatttgga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagcgtgcatagcacattcttgtttgtgtatatggattgtcatgatgtcatatgtaatatttggaaatttgtgtttcagAAGCTCATTAGAGCTAGCAGTGTCGAGAAATGGGCAGTAGTAAACTTTTCTGCACGATGCAATGTCCGGGATCTTGTCCGTGATCTCATCAAGTGTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG