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gtaaggcgtctattctgtgagttgtttgtttttcagtccagttatatttaatgataattttgttctctccatactaatcttttgatgttttattatgtctctggcagGATGATGCTCATATCTTCTGCAGAGAAGACCAA
species | Zea mays |
transcript | GRMZM2G553314_T01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: AGCTTAGTGGTGCTCTTACAGGTTTGACACGTGTTAGAAGATTCCAGCAG GATGATGCTCATATCTTCTGCAGAGAAGACCAAEST: gi|67033102|gb|CO461851.1|CO461851
genomic: AGCTTAGTGGTGCTCTTACAGGTTTGACACGTGTTAGAAGATTCCAGCAGgtaaggcgtc ... tctctggcagGATGATGCTCATATCTTCTGCAGAGAAGACCAA
EST: AGCTTAGTGGTGCTCTTACAGGTTTGACACGTGTTAGAAGATTCCAGCAG GATGATGCTCATATCTTCTGCAGAGAAGACCAAEST: gi|22545540|gb|BU097899.1|BU097899
genomic: AGCTTAGTGGTGCTCTTACAGGTTTGACACGTGTTAGAAGATTCCAGCAGgtaaggcgtc ... tctctggcagGATGATGCTCATATCTTCTGCAGAGAAGACCAA
EST: AGCTTAG-GGTGCTCTTACAGGTTTGACACGTGTTAGAAGATTCCAGCAG GATGATGCTCATATCTTCTGCAGAGAAGACCAAEST: gi|211403724|gb|FL311348.1|FL311348
genomic: AGCTTAGTGGTGCTCTTACAGGTTTGACACGTGTTAGAAGATTCCAGCAGgtaaggcgtc ... tctctggcagGATGATGCTCATATCTTCTGCAGAGAAGACCAA
EST: AGCTTAGTGGTGCTCTTACAGGTTTGACACGTGTTARAAGATTCCAGCAG GATGATGCTCATATCTTCTGCAGAGAAGACCAAEST: gi|211181488|gb|FL345837.1|FL345837
genomic: AGCTTAGTGGTGCTCTTACAGGTTTGACACGTGTTAGAAGATTCCAGCAGgtaaggcgtc ... tctctggcagGATGATGCTCATATCTTCTGCAGAGAAGACCAA
EST: AGCTTAGTGGTACTCTTACAGGTTTGACACGTGTTAGAAGATTCCAGCAG GATGATGCTCATATCTTCTGCAGAGAAGACCAAEST: gi|32832310|gb|CD971988.1|CD971988
genomic: AGCTTAGTGGTGCTCTTACAGGTTTGACACGTGTTAGAAGATTCCAGCAGgtaaggcgtc ... tctctggcagGATGATGCTCATATCTTCTGCAGAGAAGACCAA
EST: AGCTTAGTGGTGCTCTTACAGGTTTGACACGTGTTAGAAGATTCCAGCAG GATGATGCTCATATCTTCTGCAGAGAAGACCAAEST: gi|211197538|gb|FL314132.1|FL314132
genomic: AGCTTAGTGGTGCTCTTACAGGTTTGACACGTGTTAGAAGATTCCAGCAGgtaaggcgtc ... tctctggcagGATGATGCTCATATCTTCTGCAGAGAAGACCAA
EST: AGCTTAGTGGTGCTCTTACAGGTTTGACACGTGTTAGAAGATTCCAGCAG GATGATGCTCATATCTTCTGCAGAGAAGACCAAEST: gi|32834031|gb|CD973709.1|CD973709
genomic: AGCTTAGTGGTGCTCTTACAGGTTTGACACGTGTTAGAAGATTCCAGCAGgtaaggcgtc ... tctctggcagGATGATGCTCATATCTTCTGCAGAGAAGACCAA
EST: AGCTTAGTGGTGCTCTTACAGGTTTGACACGTGTTAGAAGATTCCAGCAG GATGATGCTCATATCTTCTGCAGAGAAGACCAAEST: gi|50324858|gb|CO519984.1|CO519984
genomic: AGCTTAGTGGTGCTCTTACAGGTTTGACACGTGTTAGAAGATTCCAGCAGgtaaggcgtc ... tctctggcagGATGATGCTCATATCTTCTGCAGAGAAGACCAA
EST: AGCTTAGTGGTGCTCTTACAGGTTTGACACGTGTTAGAAGATTCCAGCAG GATGATGCTCATATCTTCTGCAGAGAAGACCAAEST: gi|20802797|gb|BQ293847.1|BQ293847
genomic: AGCTTAGTGGTGCTCTTACAGGTTTGACACGTGTTAGAAGATTCCAGCAGgtaaggcgtc ... tctctggcagGATGATGCTCATATCTTCTGCAGAGAAGACCAA
EST: GTTTGACACGTGTTAGAAGATTCCAGCAG GATGATGCTCATATCTTCTGCAGAGAAGACCAA
genomic: GTTTGACACGTGTTAGAAGATTCCAGCAGgtaaggcgtc ... tctctggcagGATGATGCTCATATCTTCTGCAGAGAAGACCAA
gataattttgttctctccatactaatcttttgatgttttattatgtctctggcagGATGATGCTCATATCTTCTGCAGAGAAGACCAA
tgtctct CT-rich tract
taatcttttgatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggcgtctattctgtgagttgtttgtttttcagtccagttatatttaatgataattttgttctctccatactaatcttttgatgttttattatgtctctggcagGATGATGCTCATATCTTCTGCAGAGAAGACCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG