Sequence
atgc intronic sequence ATGC exonic sequence...gatctcacttattgacccgagtcaacacaaattctcttgctttacagcatatattcagtaaaatgctaagccactttttgcctcgttatttactgaatagATATGTGAGTGCGCTGTTTTGACTGATCGATTGGAAGTACTTAATCTATCTGGGAATCGCCTCACTGATGCATGCAGTTCTTACCTATTCACAATCCTGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G472023_T02 (Zea mays), 3'ss of exon 12
lower sequence: LOC_Os02g54170.1 (Oryza sativa), 3'ss of exon 3
gatctcacttattgacccgagtcaacacaaattctcttgctttacagcatatattcagtaaaatgctaagccact-----ttttgcctcgttatttactga-atagATATGTGAGTGCGCTGTTTTGACTGATCGATTGGAAGTACTTAATCTATCTGGGAATCGCCTCACTGATGCATGCAGTTCTTACCTATTCACAATCCTGA
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----tcgttgccta--tcggaccaaaataagctgtcttgctttcaggcacacgttcattttaggaacagaattctgaaatcatttactccttatttactgatacagATATGTGAGTGCGCTGTTATGACTAATCGATTGGAAGTACTTAATCTGTCTGGGAATCGCCTCACAGATGCATGCGGTTCTTACCTTTTCACAATCCTAC
upper sequence: GRMZM2G472023_T02 (Zea mays), 3'ss of exon 12
lower sequence: LOC_Os02g54280.1 (Oryza sativa), 3'ss of exon 13
gatctcacttattgacccgagtcaacacaaattctcttgctttacagcatatattcagtaaaatgctaagccact-----ttttgcctcgttatttactga-atagATATGTGAGTGCGCTGTTTTGACTGATCGATTGGAAGTACTTAATCTATCTGGGAATCGCCTCACTGATGCATGCAGTTCTTACCTATTCACAATCCTGA
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----tcactgccta--tcagaccaaaataagctgtcttgctttcaggcacatgttcattttaggaacagaattctgaaatcatttgctccttatttactaatacagATATGTGAGTGTGCTGTTATGACTAATCGATTAGAAGTACTTAATCTGTCTGGGAATCGCCTCACAGATGCATGCGGTTCTTACCTTTTCACAGTCCTAC
upper sequence: GRMZM2G472023_T02 (Zea mays), 3'ss of exon 12
lower sequence: Vv04s0044g00860.t01 (Vitis vinifera), 3'ss of exon 13
---gatctcacttattgacccgagtcaacacaaattctcttgctttacagcatatattcagtaaaatgctaagccactttttgcctcgttatttactgaatagATATGTGAGTGCGCTGTTTTGACTGATCGATTGGAAGTACTTAATCTATCTGGGAATCGCCTCACTGATGCATGCAGTTCTTACCTATTCACAATCCTGA
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agtgctttta-ttattgtatttactcattattgacataacta--taattggaaatgccttttcaagtgactaaatacaggtttattacatatatgatctccagATTTGTGAATGCCCTGTGCTATTTGCTCGATTGGAAGTGCTTAATATCTCTGGGAACCGTCTCACTGATGCATGTGGATCTTACCTTTCAACTATCTTGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agcatatattcagtaaaatgctaagccactttttgcctcgttatttactgaatagATATGTGAGTGCGCTGTTTTGACTGATCGATTGGAAGTACTTAATCTATCTGGGAATCGCCTCACTGATGCATGCAGTTCTTACCTATTCACAATCCTGA
atattcagtaaaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gatctcacttattgacccgagtcaacacaaattctcttgctttacagcatatattcagtaaaatgctaagccactttttgcctcgttatttactgaatagATATGTGAGTGCGCTGTTTTGACTGATCGATTGGAAGTACTTAATCTATCTGGGAATCGCCTCACTGATGCATGCAGTTCTTACCTATTCACAATCCTGA
- - - - - - - - - - - caacaca
- - - - - - - - - - - - - - - - -ctcttgc
- - - - - - - - - - - - - - - - - - - - - tacagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgctaa