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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtatctacagaccattctgatatgttttattttgtcccgttagtagtatggtcttgtgctttatattctgtaatcttaactcttcgtttcaatagaatcccactattttacagtttcattgcattgacatacaatttttctattaattacctagATCCTCAATCCTTGTGAGAGTTTTCCAAACATGGTTGTTGATCATCC

Basic information

species Zea mays
transcript GRMZM2G468929_T01
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G468929_T01 (Zea mays), 3'ss of exon 12
lower sequence: LOC_Os02g04750.1 (Oryza sativa), 3'ss of exon 7
gtaagtatctacagaccattctgatatgttttattttgtcccgttagtagtatggtcttgtgctttatattctgtaatcttaactcttcgtttcaatagaatcccactattttacagtttcattgcattgacatacaatttttctattaattacctagATCCTCAATCCTTGTGAGAGTTTTCCAAACATGGTTGTTGATCATCC
                                                   |||   ||    |  || | |  | |    | | | |  |||   |  | | |     | || |  || |    |  ||||||      | ||  || || |||||||| ||||||||||||||||||||| |||||||||| || ||| ||||
---------------------------------------------------atgtattttcagtacatttacattgaagaaatcacctgttttatttcaagttct----tattgccattgcgg-accctgacatgt--cctctccttttataacctagATTCTCAATCCTTGTGAGAGTTTTTCAAACATGGTGGTCGATTATCC

upper sequence: GRMZM2G468929_T01 (Zea mays), 3'ss of exon 12
lower sequence: LOC_Os11g35710.1 (Oryza sativa), 3'ss of exon 12
gtaagtatctacagaccattctgatatgttttattttgtcccgttagtagtatggtcttgtgctttatattctgtaatcttaactcttcgtttcaatagaatcccactattttacagtttcattgcattgacatacaatttttctattaattacctagATCCTCAATCCTTGTGAGAGTTTTCCAAACATGGTTGTTGATCATCC
                                                   ||| |   || |  | |||  || |    ||     ||      || |  ||  |      | |  |||  | |   ||||||    ||||| |||  || |||||| | |||| |||||||||||||||||||||||| || |||||| ||||
---------------------------------------------------atgtttcagtacact-tatattgaagaactagtcaatcaccagtat-gtttcttatggccatgcgattt-gtagtcctgacatgt--tttttttat--ataacctagGTTCTCAGTCCTTGTGAGAGTTTTCCAAACATAGTGGTTGATTATCC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccactattttacagtttcattgcattgacatacaatttttctattaattacctagATCCTCAATCCTTGTGAGAGTTTTCCAAACATGGTTGTTGATCATCC
                                         tattaat  putative branch site (score: 2)
                       attgacatacaatttt  TA-rich tract