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...tccgttcttggtttttctacagtgatatcaacttgagactcataatgtgctctaaatttgtttatgcaagaacgataattaacgttgttacttgatgtagGTTCCATGTGATGTAACACTTTGGGCATCAATTGGAGGCCAAGATGTAGATCGTCTTCCATCTGCTTCCACATGCTACAATACGCTCAAG
species | Zea mays |
transcript | GRMZM2G461948_T01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TCCACTGCTTGGATTACAAGTACTTGCAACCTTCTTTCACAATTCATAAG GTTCCATGTGATGTAACACTTTGGGCAEST: gi|211347750|gb|FL469207.1|FL469207
genomic: TCCACTGCTTGGATT-CAAGTACTTGCAACCTTCTTTCACAATTCATAAGgtttgagcaa ... cttgatgtagGTTCCATGTGATGTAACACTTTGGGCA
EST: CTCCMCTGCTTGGATTCAAGTACTTGCAACCTTCTTTCACAATTCATAAG GTTCCATGTTATGTAACACTTTGGGCATCAATTGGAGGCCAARATGTAGAT
genomic: CTCCACTGCTTGGATTCAAGTACTTGCAACCTTCTTTCACAATTCATAAGgtttgagcaa ... cttgatgtagGTTCCATGTGATGTAACACTTTGGGCATCAATTGGAGGCCAAGATGTAGAT
tgtgctctaaatttgtttatgcaagaacgataattaacgttgttacttgatgtagGTTCCATGTGATGTAACACTTTGGGCATCAATTGGAGGCCAAGATGTAGATCGTCTTCCATCTGCTTCCACATGCTACAATACGCTCAAG
tctaaatttgtttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccgttcttggtttttctacagtgatatcaacttgagactcataatgtgctctaaatttgtttatgcaagaacgataattaacgttgttacttgatgtagGTTCCATGTGATGTAACACTTTGGGCATCAATTGGAGGCCAAGATGTAGATCGTCTTCCATCTGCTTCCACATGCTACAATACGCTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- -gttcttg
- - - - - - - - - - - - - - - - - - - - - - -tgtgctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgcaag