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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaagcaagctgtcttgtttacaactggagtagtgtgatggtgcatgcatcctctgtttttctttctccatggcttggctttggctctaatgcttatttttacgcagGAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGATGTGGGCCTATACGTGTTCGCATCCAAGCCGTCGAGCGGCGCGGCCATAC

Basic information

species Zea mays
transcript GRMZM2G458549_T02
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G458549_T01 (Zea mays), 3'ss of exon 12
lower sequence: LOC_Os03g61710.1 (Oryza sativa), 3'ss of exon 12
-----------------------------------------------------------gcaagcaagctgtcttgtttacaactggagt------agtgtgatggtgcatgcatcctctgtttttctttctccatggcttggctt-tggctctaatgcttatttttacgcagGAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGATGTGGGCCTATACGTGTTCGCATCCAAGCCGTCGAGCGGCGCGGCCATAC
                                                            ||  ||   |  |  |   ||||||  |||      | |   |  |     ||| |  |    | | ||| |    ||     ||    |     ||    |||||   |||||||| |||||| ||||||||||| ||| ||||||| ||||| |||   ||| | ||  | ||||||||||| |||||||||||||| || || |||||| 
gtaaattaaatctgtaagctcttgtctttatccaataagcaacatatatgcatgataatacatacataat-ccacgcagacaactatagtctacatatttcaagtgaaacagcagcacccaactctgtttattggaggtgatcctcactgacaagatatacattttattgcagGAAACGTACTATAAATCAAGGATCGACCGGGGAGTGATCAACCAGAAGGATCTTGGGTTGTACGTGTTCGCGTCCAAGCCGTCGAGTGGAGCAGCCATAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|50337770|gb|CO532896.1|CO532896
EST:     TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAG                         GAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
genomic: TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAGgcaagcaagc ... ttttacgcagGAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
EST: gi|60349907|gb|DN216880.1|DN216880
EST:     TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAG                         GAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
genomic: TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAGgcaagcaagc ... ttttacgcagGAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
EST: gi|60398990|gb|DN231806.1|DN231806
EST:     TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAG                         GAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
genomic: TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAGgcaagcaagc ... ttttacgcagGAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
EST: gi|67018909|gb|CO447658.1|CO447658
EST:     TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAG                         GAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
genomic: TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAGgcaagcaagc ... ttttacgcagGAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
EST: gi|149071532|gb|EE159923.2|EE159923
EST:     TTGCTTTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTTTGAAACTAAAG                         GAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
genomic: TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAGgcaagcaagc ... ttttacgcagGAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
EST: gi|76011230|gb|DT938400.1|DT938400
EST:     TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAG                         GAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
genomic: TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAGgcaagcaagc ... ttttacgcagGAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
EST: gi|93014043|gb|EB639563.1|EB639563
EST:     TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTTTGAAACTAAAG                         GAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
genomic: TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAGgcaagcaagc ... ttttacgcagGAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
EST: gi|78111011|gb|DV529408.1|DV529408
EST:     TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAG                         GAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
genomic: TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAGgcaagcaagc ... ttttacgcagGAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
EST: gi|60338971|gb|DN205944.1|DN205944
EST:     TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAG                         GAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
genomic: TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAGgcaagcaagc ... ttttacgcagGAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
EST: gi|110524608|gb|EE028792.1|EE028792
EST:     TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTTTGAAACTAAAG                         GAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
genomic: TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAGgcaagcaagc ... ttttacgcagGAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
EST: gi|148951726|gb|EC897479.2|EC897479
EST:     TTGCTTTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAG                         GAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
genomic: TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAGgcaagcaagc ... ttttacgcagGAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
EST: gi|71434413|gb|DR815463.1|DR815463
EST:     TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAG                         GAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
genomic: TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAGgcaagcaagc ... ttttacgcagGAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
EST: gi|85153037|gb|DW587944.1|DW587944
EST:     TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAG                         GAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
genomic: TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAGgcaagcaagc ... ttttacgcagGAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
EST: gi|116826426|gb|EC870214.1|EC870214
EST:     TTGCTCTGGTCAAGGAGCCCATCGTCCCCCAGTTCATTCTGAAACTAAAG                         GAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
genomic: TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAGgcaagcaagc ... ttttacgcagGAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
EST: gi|88746509|gb|DY530650.1|DY530650
EST:     TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTTTGAAACTAAAG                         GAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
genomic: TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAGgcaagcaagc ... ttttacgcagGAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
EST: gi|60345732|gb|DN212705.1|DN212705
EST:     TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAG                         GAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
genomic: TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAGgcaagcaagc ... ttttacgcagGAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
EST: gi|87152649|gb|DY397438.1|DY397438
EST:     TTGCTCTGGTCAAGGAGCCCATCGTCCCCCAGTTCATTCTGAAACTAAAG                         GAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
genomic: TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAGgcaagcaagc ... ttttacgcagGAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
EST: gi|89764287|gb|DY691149.1|DY691149
EST:     TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAG                         GAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
genomic: TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAGgcaagcaagc ... ttttacgcagGAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
EST: gi|37386348|gb|CF630360.1|CF630360
EST:     TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAG                         GAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGTGAT
genomic: TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAGgcaagcaagc ... ttttacgcagGAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
EST: gi|148960155|gb|EE153405.2|EE153405
EST:     TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAG                         GAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
genomic: TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAGgcaagcaagc ... ttttacgcagGAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
EST: gi|17969988|gb|BM276757.1|BM276757
EST:     TTGCTCTGGTCAAGGAGCCCATCGTCCCCCAGTTCATTCTGAAACTAAAG                         GAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
genomic: TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAGgcaagcaagc ... ttttacgcagGAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
EST: gi|78025070|gb|DV493457.1|DV493457
EST:     TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAG                         GAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
genomic: TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAGgcaagcaagc ... ttttacgcagGAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
EST: gi|71434164|gb|DR815214.1|DR815214
EST:     TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAG                         GAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
genomic: TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAGgcaagcaagc ... ttttacgcagGAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
EST: gi|67016317|gb|CO445066.1|CO445066
EST:     TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAG                         GAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
genomic: TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAGgcaagcaagc ... ttttacgcagGAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
EST: gi|76912625|gb|DV164824.1|DV164824
EST:     TTGCTTTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTTTGAAACTAAAG                         GAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
genomic: TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAGgcaagcaagc ... ttttacgcagGAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
EST: gi|71762160|gb|DR960097.1|DR960097
EST:     TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAG                         GAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
genomic: TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAGgcaagcaagc ... ttttacgcagGAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
EST: gi|211541592|gb|FL022795.1|FL022795
EST:     TTGCTCTGGTCAAGGAGCCCATCGTCCCCCAGTTCATTCTGAAACTAAAG                         GAAATGTACTACAAATCAAGGATTGA
genomic: TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAGgcaagcaagc ... ttttacgcagGAAATGTACTACAAATCAAGGATTGA
EST: gi|71318358|gb|DR795941.1|DR795941
EST:     TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAG                         GAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
genomic: TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAGgcaagcaagc ... ttttacgcagGAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
EST: gi|71434414|gb|DR815464.1|DR815464
EST:     TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAG                         GAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
genomic: TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAGgcaagcaagc ... ttttacgcagGAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
EST: gi|71447465|gb|DR828515.1|DR828515
EST:     TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAG                         GAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
genomic: TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAGgcaagcaagc ... ttttacgcagGAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
EST: gi|211135219|gb|FL444577.1|FL444577
EST:     TTGCTCTGGTCAAGGAGCCCATCGTCCCCCAGTTCATTCTGAAACTAAAG                         GAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
genomic: TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAGgcaagcaagc ... ttttacgcagGAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
EST: gi|74231837|gb|DT639751.1|DT639751
EST:     TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTTTGAAACTAAAG                         GAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
genomic: TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAGgcaagcaagc ... ttttacgcagGAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
EST: gi|50337771|gb|CO532897.1|CO532897
EST:     TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAG                         GAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
genomic: TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAGgcaagcaagc ... ttttacgcagGAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
EST: gi|71773515|gb|DR971415.1|DR971415
EST:     TTGCTTTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTTTGAAACTAAAG                         GAAATGTTCTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
genomic: TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAGgcaagcaagc ... ttttacgcagGAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
EST: gi|78085243|gb|DV513636.1|DV513636
EST:     TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTTTGAAACTAAAG                         GAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
genomic: TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAGgcaagcaagc ... ttttacgcagGAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
EST: gi|50330092|gb|CO525218.1|CO525218
EST:     TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTTTGAAACTAAAG                         GAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT
genomic: TTGCTCTGGTCAAGGAGCCCATCGTCCCTCAGTTCATTCTGAAACTAAAGgcaagcaagc ... ttttacgcagGAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgtttttctttctccatggcttggctttggctctaatgcttatttttacgcagGAAATGTACTACAAATCAAGGATTGACAGGGGAGTAATCAAGCAGGGCGATGTGGGCCTATACGTGTTCGCATCCAAGCCGTCGAGCGGCGCGGCCATAC
                                ctctaat  putative branch site (score: 3)
                                        cttattttt  CT-rich tract
                                   taatgcttattttta  TA-rich tract