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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcacatttggtagggctctgttttagatcctgtttttttcacactttttgttacttccaacaaagctcaatgctcactaatgtttttatctatccattagGAGTTTATCCACCTTTTCATCCGATGATTGGATTACAATTCTATACTTGTGGAAAGCTTGAATGGTATGGACTATTAGCCCTTACCTATTTACCTCACAC

Basic information

species Zea mays
transcript GRMZM2G457881_T03
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G457881_T03 (Zea mays), 3'ss of exon 12
lower sequence: LOC_Os03g49730.3 (Oryza sativa), 3'ss of exon 11
tcacatttggtagggctctgttttagatcctgtttttttcacactttttgttacttccaacaaagctcaatgctcactaatgtttttatctatccattagGAGTTTATCCACCTTTTCATCCGATGATTGGATTACAATTCTATACTTGTGGAAAGCTTGAATGGTATGGACTATTAGCCCTTACCTATTTACCTCACAC
||| ||| || | | || | | || || |||| | ||| ||||||| ||||||||||| || || |||| |||| ||||||||||| || |||||||||||||| ||||||||||| ||||||||||||||||||||| || | || || | |||
---------gtaaggcacttctct---tcttacagcgtgcagtctcacacttac-----ataaaactcaatgatcactaatgttgttgcacttctgccagGAATTTACCCACCTTTTCACCCAATGATTGGATTACAGTTCTATACTTGCGGAAAGCTTGAATGGTATGGAATACTTTTCCCTATTCACCTACT------

upper sequence: GRMZM2G457881_T03 (Zea mays), 3'ss of exon 12
lower sequence: LOC_Os03g49730.2 (Oryza sativa), 3'ss of exon 12
tcacatttggtagggctctgttttagatcctgtttttttcacactttttgttacttccaacaaagctcaatgctcactaatgtttttatctatccattagGAGTTTATCCACCTTTTCATCCGATGATTGGATTACAATTCTATACTTGTGGAAAGCTTGAATGGTATGGACTATTAGCCCTTACCTATTTACCTCACAC
||| ||| || | | || | | || || |||| | ||| ||||||| ||||||||||| || || |||| |||| ||||||||||| || |||||||||||||| ||||||||||| ||||||||||||||
---------gtaaggcacttctct---tcttacagcgtgcagtctcacacttac-----ataaaactcaatgatcactaatgttgttgcacttctgccagGAATTTACCCACCTTTTCACCCAATGATTGGATTACAGTTCTATACTTGCGGAAAGCTTGAATG------------------------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgttacttccaacaaagctcaatgctcactaatgtttttatctatccattagGAGTTTATCCACCTTTTCATCCGATGATTGGATTACAATTCTATACTTGTGGAAAGCTTGAATGGTATGGACTATTAGCCCTTACCTATTTACCTCACAC
                             cactaat  putative branch site (score: 2)
 tttttatct  CT-rich tract
 taatgtttttatctat  TA-rich tract