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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtacctgctaacaaaaaaaagtctcctgttcctgttatttcaatgtttaatggatctagttcctcaaaacatgtgcatcctaactctgatctcattgcagACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATACTGATTTCAGTCATAATGTTTATCAAAGATCACATCATTGGGGACAGCAC

Basic information

species Zea mays
transcript GRMZM2G435373_T02
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G435373_T01 (Zea mays), 3'ss of exon 12
lower sequence: LOC_Os05g34540.1 (Oryza sativa), 3'ss of exon 12
------gtacctgctaacaaaaaaaagtctcctgttcctgttatttcaatgtttaatggatctagttcctcaaaacatgtgcatcctaactctgatctcattgcagACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATACT---GATTTCAGTCATAATGT--TTATCAAAGATCACATCATTGGGGACAGCAC
       |      ||  ||| | |  ||   |      | ||||    ||   |||  || || ||  ||      | |   |||||| |||  |||  ||||||||||| ||||| ||||| ||||||||||| || ||||||||||||||||| |   | |  || ||| |||    | ||  |  |  | || ||      |     
gttatcttcttaattactaaatacatatccattcgattggctattctgttgcacaatt-atgtattttgtcc-----tttctttcctaattcttctctgcttgcagACTGTTGATCTCAGTGTCGATTTGAGTGCTGCCAGTGCTGCTGAAGAATATTAGAGTTCACAATCAAAATCCAATCATTCACAAAGATATAATGCTATTC-----

upper sequence: GRMZM2G435373_T01 (Zea mays), 3'ss of exon 12
lower sequence: LOC_Os05g23860.1 (Oryza sativa), 3'ss of exon 12
gtacctgctaacaaaaaaaagtctcctgttcctgttatttcaatgtttaatggatcta-gttcctcaaaacatgtgcatcctaactc-tgatctcattgcagACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATACT-GATTTCAGTCATAATGTTTATCAAAGATCACATCATTGGGGACAGCAC-----
        |   |||   || ||   | |    | ||||    ||||| |    | |   |||  |        |   || |  ||| |      ||||||| |||| ||||| ||||| ||||||||||| || ||||| ||||||||||| | |||||||     || | | |      ||||  |||    |    ||       
-ccttaaattctaaatccaaatccattctgttggctattgtt-tgttttacaattatgtattctacccttttcctaattcttttctcattgcactattgcagGCTGTTGATCTCAGTGTTGATTTGAGTGCTGCCAGTGCCGCTGAAGAATATTAGATTTCACAACCAAAGCTCA------ATCATTTCACAAAGATATGCTTTTTCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5597098|gb|AI891301.1|AI891301
EST:     AGACAACTGTAACAGATGTCCTGAACATGTATACAATGATCACTGGAAAG                         ACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATAC
genomic: AGACAACTGTAACAGATGTCCTGAACATGTATACAATGATCACTGGAAAGgtaacatgaa ... ctcattgcagACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATAC
EST: gi|5901102|gb|AW042202.1|AW042202
EST:     AGACAACTGTAACAGATGTCCTGAACATGTATACAATGATCACTGGAAAG                         ACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATAC
genomic: AGACAACTGTAACAGATGTCCTGAACATGTATACAATGATCACTGGAAAGgtaacatgaa ... ctcattgcagACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATAC
EST: gi|60348090|gb|DN215063.1|DN215063
EST:     ATGTATACAAGGATCACTGGAAAG                         ACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATAC
genomic: ATGTATACAATGATCACTGGAAAGgtaacatgaa ... ctcattgcagACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATAC
EST: gi|24934285|gb|CA452503.1|CA452503
EST:     AGACAACTGTAACAGATGTCCTGAACATGTATACAATGATCACTGGAAAG                         ACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATAC
genomic: AGACAACTGTAACAGATGTCCTGAACATGTATACAATGATCACTGGAAAGgtaacatgaa ... ctcattgcagACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATAC
EST: gi|213167548|gb|FM181807.1|FM181807
EST:     AGACAACTGTAACAGATGTCCTGAACATGTATACAATGATCACTGGAAAG                         ACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATAC
genomic: AGACAACTGTAACAGATGTCCTGAACATGTATACAATGATCACTGGAAAGgtaacatgaa ... ctcattgcagACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATAC
EST: gi|37401104|gb|CF637915.1|CF637915
EST:     AGACAACTGTAACAGATGTCCTGAACATGTATACAATGATCACTGGAAAG                         ACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATAC
genomic: AGACAACTGTAACAGATGTCCTGAACATGTATACAATGATCACTGGAAAGgtaacatgaa ... ctcattgcagACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATAC
EST: gi|67031426|gb|CO460175.1|CO460175
EST:     AGACAACTGTAACAGATGTCCTGAACATGTATACAATGATCACTGGAAAG                         ACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGA-TAC
genomic: AGACAACTGTAACAGATGTCCTGAACATGTATACAATGATCACTGGAAAGgtaacatgaa ... ctcattgcagACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATAC
EST: gi|5895890|gb|AW037136.1|AW037136
EST:     AGACAACTGTAACAGATGTCCTGAACATGTATACAATGATCACTGGAAAG                         ACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATAC
genomic: AGACAACTGTAACAGATGTCCTGAACATGTATACAATGATCACTGGAAAGgtaacatgaa ... ctcattgcagACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATAC
EST: gi|37401085|gb|CF637905.1|CF637905
EST:     AGACAACTGTAACAGATGTCCTGAACATGTATACAATGATCACTGGAAAG                         ACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATAC
genomic: AGACAACTGTAACAGATGTCCTGAACATGTATACAATGATCACTGGAAAGgtaacatgaa ... ctcattgcagACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATAC
EST: gi|33093438|gb|CF053432.1|CF053432
EST:     AGACAACTGTAACAGATGTCCTGAACATGTATACAATGATCACTGGAAAG                         ACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATAC
genomic: AGACAACTGTAACAGATGTCCTGAACATGTATACAATGATCACTGGAAAGgtaacatgaa ... ctcattgcagACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATAC
EST: gi|60396805|gb|DN229633.1|DN229633
EST:     AGACAACTGTAACAGATGTCCTGAACATGTATACAATGATCACTGGAAAG                         ACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATAC
genomic: AGACAACTGTAACAGATGTCCTGAACATGTATACAATGATCACTGGAAAGgtaacatgaa ... ctcattgcagACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATAC
EST: gi|5871395|gb|AW017866.1|AW017866
EST:     AGACAACTGTAACAGATGTCCTGAACATGTATACAATGATCACTGGAAAG                         ACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATAC
genomic: AGACAACTGTAACAGATGTCCTGAACATGTATACAATGATCACTGGAAAGgtaacatgaa ... ctcattgcagACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATAC
EST: gi|33095264|gb|CF055258.1|CF055258
EST:     AGACAACTGTAACAGATGTCCTGAACATGTATACAATGATCACTGGAAAG                         ACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATAC
genomic: AGACAACTGTAACAGATGTCCTGAACATGTATACAATGATCACTGGAAAGgtaacatgaa ... ctcattgcagACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATAC
EST: gi|6828046|gb|AW331689.1|AW331689
EST:     AGACAACTGTAACAGATGTCCTGAACATGTATACAATGATCACTGGAAAG                         ACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATNC
genomic: AGACAACTGTAACAGATGTCCTGAACATGTATACAATGATCACTGGAAAGgtaacatgaa ... ctcattgcagACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATAC
EST: gi|60398565|gb|DN231381.1|DN231381
EST:     AGACAACTGTAACAGATGTCCTGAACATGTATACAATGATCACTGGAAAG                         ACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATAC
genomic: AGACAACTGTAACAGATGTCCTGAACATGTATACAATGATCACTGGAAAGgtaacatgaa ... ctcattgcagACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATAC
EST: gi|5901209|gb|AW042309.1|AW042309
EST:     AGACAACTGTAACAGATGTCCTGAACATGTATACAATGATCACTGGAAAG                         ACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATAC
genomic: AGACAACTGTAACAGATGTCCTGAACATGTATACAATGATCACTGGAAAGgtaacatgaa ... ctcattgcagACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATAC
EST: gi|33102234|gb|CF062194.1|CF062194
EST:     AGACAACTGTAACAGATGTCCTGAACATGTATACAATGATCACTGGAAAG                         ACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATAC
genomic: AGACAACTGTAACAGATGTCCTGAACATGTATACAATGATCACTGGAAAGgtaacatgaa ... ctcattgcagACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATAC
EST: gi|211493510|gb|FL163238.1|FL163238
EST:     AGACAACTGTAACAGATGTCCTGAACATGTATACAATGATCACTGGAAAG                         ACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATAC
genomic: AGACAACTGTAACAGATGTCCTGAACATGTATACAATGATCACTGGAAAGgtaacatgaa ... ctcattgcagACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATAC
EST: gi|33095120|gb|CF055114.1|CF055114
EST:     AGACAACTGTAACAGATGTCCTGAACATGTATACAATGATCACTGGAAAG                         ACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATAC
genomic: AGACAACTGTAACAGATGTCCTGAACATGTATACAATGATCACTGGAAAGgtaacatgaa ... ctcattgcagACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATAC
EST: gi|37384015|gb|CF629050.1|CF629050
EST:     AGACAACTGTAACAGATGTCCTGAACATGTATACAATGATCACTGGAAAG                         ACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATAC
genomic: AGACAACTGTAACAGATGTCCTGAACATGTATACAATGATCACTGGAAAGgtaacatgaa ... ctcattgcagACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATAC
EST: gi|29544053|gb|CB604433.1|CB604433
EST:     GTAACAGATGTCCTGAACATGTATACAATGATCACTGGAAAG                         ACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATAC
genomic: GTAACAGATGTCCTGAACATGTATACAATGATCACTGGAAAGgtaacatgaa ... ctcattgcagACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATAC
EST: gi|31612098|gb|CD568720.1|CD568720
EST:     AGACAACTGTAACAGATGTCCTGAACATGTATACAATGATCACTGGAAAG                         ACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATAC
genomic: AGACAACTGTAACAGATGTCCTGAACATGTATACAATGATCACTGGAAAGgtaacatgaa ... ctcattgcagACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATAC
EST: gi|67021306|gb|CO450055.1|CO450055
EST:     AGACAACTGTAACAGATGTCCTGAACATGTATACAATGATCACTGGAAAG                         ACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATAC
genomic: AGACAACTGTAACAGATGTCCTGAACATGTATACAATGATCACTGGAAAGgtaacatgaa ... ctcattgcagACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATAC
EST: gi|5525493|gb|AI861386.1|AI861386
EST:     AGACAACTGTAACAGATGTCCTGAACATGTATACAATGATCACTGGAAAG                         ACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATAC
genomic: AGACAACTGTAACAGATGTCCTGAACATGTATACAATGATCACTGGAAAGgtaacatgaa ... ctcattgcagACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATAC
EST: gi|33091488|gb|CF051482.1|CF051482
EST:     AGACAACTGTAACAGATGTCCTGAACATGTATACAATGATCCCTGGAAAG                         ACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATAC
genomic: AGACAACTGTAACAGATGTCCTGAACATGTATACAATGATCACTGGAAAGgtaacatgaa ... ctcattgcagACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATAC
EST: gi|32933839|gb|CF038651.1|CF038651
EST:     AGACAACTGTAACAGATGTCCTGAACATGTATACAATGATCACTGGAAAG                         ACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATAC
genomic: AGACAACTGTAACAGATGTCCTGAACATGTATACAATGATCACTGGAAAGgtaacatgaa ... ctcattgcagACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATAC
EST: gi|60359326|gb|DN226299.1|DN226299
EST:     AGACAACTGTAACAGATGTCCTGAACATGTATACAATGATCACTGGAAAG                         ACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATAC
genomic: AGACAACTGTAACAGATGTCCTGAACATGTATACAATGATCACTGGAAAGgtaacatgaa ... ctcattgcagACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATAC
EST: gi|30087662|gb|CB885868.1|CB885868
EST:     AGACAACTGTAACAGATGTCCTGAACATGTATACAATGATCACTGGAAAG                         ACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAAAAAAGCTGAAGAATAC
genomic: AGACAACTGTAACAGATGTCCTGAACATGTATACAATGATCACTGGAAAGgtaacatgaa ... ctcattgcagACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATAC
EST: gi|32919393|gb|CF024205.1|CF024205
EST:     AGACAACTGTAACAGATGTCCTGAACATGTATACAATGATCACTGGAAAG                         ACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATAC
genomic: AGACAACTGTAACAGATGTCCTGAACATGTATACAATGATCACTGGAAAGgtaacatgaa ... ctcattgcagACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATAC
EST: gi|113704014|gb|EE681518.1|EE681518
EST:     AGACAACTGTAACAGATGTCCTGAACATGTATACAATGATCACTGGAAAG                         ACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATAC
genomic: AGACAACTGTAACAGATGTCCTGAACATGTATACAATGATCACTGGAAAGgtaacatgaa ... ctcattgcagACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATAC
EST: gi|32936708|gb|CF041527.1|CF041527
EST:     AGACAACTGTAACAGATGTCCTGAACATGTATACAATGATCACTGGAAAG                         ACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGCGCTGCTGAAGAATAC
genomic: AGACAACTGTAACAGATGTCCTGAACATGTATACAATGATCACTGGAAAGgtaacatgaa ... ctcattgcagACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATAC
EST: gi|33093030|gb|CF053024.1|CF053024
EST:     AGACAACTGTAACAGATGTCCTGAACATGTATACAATGATCACTGGAAAG                         ACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATAC
genomic: AGACAACTGTAACAGATGTCCTGAACATGTATACAATGATCACTGGAAAGgtaacatgaa ... ctcattgcagACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATAC
EST: gi|78021844|gb|DV490231.1|DV490231
EST:     AGACAACTGTAACAGATGTCCTGAACATGTATACAATGATCACTGGAAAG                         ACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATAC
genomic: AGACAACTGTAACAGATGTCCTGAACATGTATACAATGATCACTGGAAAGgtaacatgaa ... ctcattgcagACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATAC
EST: gi|60355746|gb|DN222719.1|DN222719
EST:     AGACAACTGTAACAGATGTCCTGAACATGTATACAATGATCACTGGAAAG                         ACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATAC
genomic: AGACAACTGTAACAGATGTCCTGAACATGTATACAATGATCACTGGAAAGgtaacatgaa ... ctcattgcagACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATAC
EST: gi|32930298|gb|CF035110.1|CF035110
EST:     AGACAACTGTAACAGATGTCCTGAACATGTATACAATGATCACTGGAAAG                         ACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATAC
genomic: AGACAACTGTAACAGATGTCCTGAACATGTATACAATGATCACTGGAAAGgtaacatgaa ... ctcattgcagACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATAC
EST: gi|149098466|gb|EE184445.2|EE184445
EST:     AGACAACTGTAACAGATGTCCTGAACATGTATACAATGATCACTGGAAAG                         ACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATAC
genomic: AGACAACTGTAACAGATGTCCTGAACATGTATACAATGATCACTGGAAAGgtaacatgaa ... ctcattgcagACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATAC
EST: gi|67014412|gb|CO443161.1|CO443161
EST:     AGACAACTGTAACAGATGTCCTGAACATGTATACAATGATCACTGGAAAG                         ACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATAC
genomic: AGACAACTGTAACAGATGTCCTGAACATGTATACAATGATCACTGGAAAGgtaacatgaa ... ctcattgcagACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATAC
EST: gi|211493511|gb|FL163239.1|FL163239
EST:     AGACAACTGTAACAGATGTCCTGAACATGTATACAATGATCACTGGAAAG                         ACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTS-TGAAGAATAC
genomic: AGACAACTGTAACAGATGTCCTGAACATGTATACAATGATCACTGGAAAGgtaacatgaa ... ctcattgcagACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 107

AGCTATGACGCCACCACACATTTTGAGACAACTGTAACAGATGTCCTGAACATGTATACAATGATCACTGGAAAGgtaacatgaa ... ctcattgcagACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATACTGATTTCAGTCATAATGTTTATCAAAGATCACATCATTGGGGACAGCAC


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 67

AGCTATGACGCCACCACACATTTTGAGACAACTGTAACAGATGTCCTGAACATGTATACAATGATCACTGGAAAGgtaacatgaa ... ctcattgcagACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATACTGATTTCAGTCATAATGTTTATCAAAGATCACATCATTGGGGACAGCAC


Block sizes: 43 (upstream exon), 48 (downstream exon)
Score: 34

AGCTATGACGCCACCACACATTTTGAGACAACTGTAACAGATGTCCTGAACATGTATACAATGATCACTGGAAAGgtaacatgaa ... ctcattgcagACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATACTGATTTCAGTCATAATGTTTATCAAAGATCACATCATTGGGGACAGCAC


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 141

AGCTATGACGCCACCACACATTTTGAGACAACTGTAACAGATGTCCTGAACATGTATACAATGATCACTGGAAAGgtaacatgaa ... ctcattgcagACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATACTGATTTCAGTCATAATGTTTATCAAAGATCACATCATTGGGGACAGCAC




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttaatggatctagttcctcaaaacatgtgcatcctaactctgatctcattgcagACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATACTGATTTCAGTCATAATGTTTATCAAAGATCACATCATTGGGGACAGCAC
                                            tctcatt  CT-rich tract
                    aaaacat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacctgctaacaaaaaaaagtctcctgttcctgttatttcaatgtttaatggatctagttcctcaaaacatgtgcatcctaactctgatctcattgcagACTGTGGATCTTAGTGTGGATTTGAGTGCAGCTAGTGCTGCTGAAGAATACTGATTTCAGTCATAATGTTTATCAAAGATCACATCATTGGGGACAGCAC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA