1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtatgtactttctgatttctgatttactttctcgactagatgtcatagttatttatgataaagaaccttatttttcgttgttgaattggtgtcacacctgcgcatgcaccttcagagatccatgctttacattctcataaagatacgtgacgatgccaatctgttgtgtatatagGTGTGCCCTGATGGAAAAACCATCGAAGCTGAAGCTGCCCATGGCACGGTTACCCGTCATTTCCGTGTCCACCAGAAAGGAGGCGAAACCAGCACGAACA
species | Zea mays |
transcript | GRMZM2G432128_T01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GTTTTGGATCTTTGGGTTTGATGACATCAGTGTTG GTGTGCCCTGATGGAAAAACCATCGAAGCTGAAGCTGCCCATGGCACGGTTEST: gi|60342210|gb|DN209183.1|DN209183
genomic: GTTTTGGATCTTTGGGTTTGATGACATCAGTGTTGgtatgtactt ... gtgtatatagGTGTGCCCTGATGGAAAAACCATCGAAGCTGAAGCTGCCCATGGCACGGTT
EST: GTTTTGGATCTTTGGGTTTGATGACATCAGTGTTG GTGTGCCCTGATGGAAAAACCATCGAAGCTGAAGCTGCCCATGGCACGGTTEST: gi|76286555|gb|DV026123.1|DV026123
genomic: GTTTTGGATCTTTGGGTTTGATGACATCAGTGTTGgtatgtactt ... gtgtatatagGTGTGCCCTGATGGAAAAACCATCGAAGCTGAAGCTGCCCATGGCACGGTT
EST: GTTTTGGATCTTTGGGTTTGATGACATCAGTGTTG GTGTGCCCTGATGGAAAAACCATCGAAGCTGAAGCTGCCCATGGCACGGTTEST: gi|148937600|gb|EC881790.2|EC881790
genomic: GTTTTGGATCTTTGGGTTTGATGACATCAGTGTTGgtatgtactt ... gtgtatatagGTGTGCCCTGATGGAAAAACCATCGAAGCTGAAGCTGCCCATGGCACGGTT
EST: GTTTTGGATCTTTGGGTTTGATGACATCAGTGTTG GTGTGCCCTGATGGAAAAACCATCGAAGCTGAAGCTGCCCATGGCACGGTTEST: gi|60338834|gb|DN205807.1|DN205807
genomic: GTTTTGGATCTTTGGGTTTGATGACATCAGTGTTGgtatgtactt ... gtgtatatagGTGTGCCCTGATGGAAAAACCATCGAAGCTGAAGCTGCCCATGGCACGGTT
EST: GTTTTGGATCTTTGGGTTTGATGACATCAGTGTTG GTGTGCCCTGATGGAAAAACCATCGAAGCTGAAGCTGCCCATGGCACGGTTEST: gi|37377043|gb|CF625092.1|CF625092
genomic: GTTTTGGATCTTTGGGTTTGATGACATCAGTGTTGgtatgtactt ... gtgtatatagGTGTGCCCTGATGGAAAAACCATCGAAGCTGAAGCTGCCCATGGCACGGTT
EST: GTTTTGGATCTTTGGGTTTGATGACATCAGTGTTG GTGTGCCCTGATGGAAAAACCATCGAAGCTGAAGCTGCCCATGGCACGGTTEST: gi|8577413|gb|BE130050.1|BE130050
genomic: GTTTTGGATCTTTGGGTTTGATGACATCAGTGTTGgtatgtactt ... gtgtatatagGTGTGCCCTGATGGAAAAACCATCGAAGCTGAAGCTGCCCATGGCACGGTT
EST: GTTTTGGATCTTTGGGTTTGATGACATCAGTGTTG GTGTGCCCTGATGGAAAAACCATCGAAGCTGAAGCTGCCCATGGCACGGTTEST: gi|21760011|gb|BQ635552.1|BQ635552
genomic: GTTTTGGATCTTTGGGTTTGATGACATCAGTGTTGgtatgtactt ... gtgtatatagGTGTGCCCTGATGGAAAAACCATCGAAGCTGAAGCTGCCCATGGCACGGTT
EST: GTTTTGGGTCTTTGGGTTTGATGACATCAGTGTTG GTGTGCCCTGATGGAAAAACCATCGAAGCTGAAGCTGCCCATGGCACGGTTEST: gi|60352624|gb|DN219597.1|DN219597
genomic: GTTTTGGATCTTTGGGTTTGATGACATCAGTGTTGgtatgtactt ... gtgtatatagGTGTGCCCTGATGGAAAAACCATCGAAGCTGAAGCTGCCCATGGCACGGTT
EST: GTTTTGGATCTTTGGGTTTGATGACATCAGTGTTG GTGTGCCCTGATGGAAAAACCATCGAAGCTGAAGCTGCCCATGGCACGGTTEST: gi|211106972|gb|FL115259.1|FL115259
genomic: GTTTTGGATCTTTGGGTTTGATGACATCAGTGTTGgtatgtactt ... gtgtatatagGTGTGCCCTGATGGAAAAACCATCGAAGCTGAAGCTGCCCATGGCACGGTT
EST: GTTTTGGATCTTTGGGTTTGATGACATCAGTGTTG GTGTGCCCTGATGGAAAAACCATCGAAGCTGAAGCTGCCCATGGCACGGTTEST: gi|67031198|gb|CO459947.1|CO459947
genomic: GTTTTGGATCTTTGGGTTTGATGACATCAGTGTTGgtatgtactt ... gtgtatatagGTGTGCCCTGATGGAAAAACCATCGAAGCTGAAGCTGCCCATGGCACGGTT
EST: GTTTTGGATCTTTGGGTTTGATGACATCAGTGGTG GTGTGCCCCTGATGGAAAAAACAATCGAAGCTGAAGCTGCCCATGGCACGGEST: gi|32916741|gb|CF021553.1|CF021553
genomic: GTTTTGGATCTTTGGGTTTGATGACATCAGTGTTGgtatgtactt ... gtgtatatagGTGTGCCC-TGATGGAAAAACCA-TCGAAGCTGAAGCTGCCCATGGCACGG
EST: GTTTTGGATCTTTGGGTTTGATGACATCAGTGTTG GTGTGCCCTGATGGAAAAACCEST: gi|5915562|gb|AW053203.1|AW053203
genomic: GTTTTGGATCTTTGGGTTTGATGACATCAGTGTTGgtatgtactt ... gtgtatatagGTGTGCCCTGATGGAAAAACC
EST: GTTTTGGATCTTTGGGTTTGATGACATCAGTGTTG GTGTGCCCTGATGGAAAAACCATCGAAGCTGAAGEST: gi|67010786|gb|CO439535.1|CO439535
genomic: GTTTTGGATCTTTGGGTTTGATGACATCAGTGTTGgtatgtactt ... gtgtatatagGTGTGCCCTGATGGAAAAACCATCGAAGCTGAAG
EST: GTTTTGGATCTTTGGGTTTGATGACATCAGTGTTG GTGTGCCCTGATGGAAAAACCATCGAAGCTGAAGCTGCCCATGGCACGGTTEST: gi|211106971|gb|FL115258.1|FL115258
genomic: GTTTTGGATCTTTGGGTTTGATGACATCAGTGTTGgtatgtactt ... gtgtatatagGTGTGCCCTGATGGAAAAACCATCGAAGCTGAAGCTGCCCATGGCACGGTT
EST: GTTTTGGATCTTTGGGTTTGATGACATCAGTGTTG GTGTGCCCTGATGGAAAAACCATCGAAGCTGAAGCTGCCCATGGCACGGTTEST: gi|61119106|gb|DN560067.1|DN560067
genomic: GTTTTGGATCTTTGGGTTTGATGACATCAGTGTTGgtatgtactt ... gtgtatatagGTGTGCCCTGATGGAAAAACCATCGAAGCTGAAGCTGCCCATGGCACGGTT
EST: AGGTTTTGGATCTTTGGGTTTGATGACATCAGTGTTG GTGTGCCCTGATGGAAAAACCATCGAAGCTGAAGCTGCCCATGGCACGGTTEST: gi|31356012|gb|CD440369.1|CD440369
genomic: AGGTTTTGGATCTTTGGGTTTGATGACATCAGTGTTGgtatgtactt ... gtgtatatagGTGTGCCCTGATGGAAAAACCATCGAAGCTGAAGCTGCCCATGGCACGGTT
EST: GTTTTGGGTCTTTGGGTTTGATGACATCAGTGTTG GTGTGCCCTGATGGAAAAAACATCGAAGCTGAAGCTGCCCATGGCACGGTTEST: gi|33092418|gb|CF052412.1|CF052412
genomic: GTTTTGGATCTTTGGGTTTGATGACATCAGTGTTGgtatgtactt ... gtgtatatagGTGTGCCCTGATGGAAAAACCATCGAAGCTGAAGCTGCCCATGGCACGGTT
EST: G-TTTGGGTCTTTGGGTTTGATGACATCAGTGTTG GTGTGCCCTGATGGAAAAACCATCGAAGCTGAAGCTGCCCATGGCACGGTTEST: gi|60352979|gb|DN219952.1|DN219952
genomic: GTTTTGGATCTTTGGGTTTGATGACATCAGTGTTGgtatgtactt ... gtgtatatagGTGTGCCCTGATGGAAAAACCATCGAAGCTGAAGCTGCCCATGGCACGGTT
EST: GTTTTGGATCTTTGGGTTTGATGACATCAGTGTTG GTGTGCCGTGATGGAAAAACCATCGAAGCTGAAGCTGCCCATGGCACGGTTEST: gi|37377787|gb|CF625533.1|CF625533
genomic: GTTTTGGATCTTTGGGTTTGATGACATCAGTGTTGgtatgtactt ... gtgtatatagGTGTGCCCTGATGGAAAAACCATCGAAGCTGAAGCTGCCCATGGCACGGTT
EST: G-TTTGGATCTTNGGGGTTTGATGACATCAGTGTTG GTGTGCCCTGATGGAAAAACCATCGAAGCTGAAGCTGCCCATGGCACGGTTEST: gi|32849367|gb|CD989048.1|CD989048
genomic: GTTTTGGATCTT-TGGGTTTGATGACATCAGTGTTGgtatgtactt ... gtgtatatagGTGTGCCCTGATGGAAAAACCATCGAAGCTGAAGCTGCCCATGGCACGGTT
EST: GACATCAGTGTTG GTGTGCCCTGATGGAAAAACCATCGAAGCTGAAGCTGCCCATGGCACGGTTEST: gi|60343928|gb|DN210901.1|DN210901
genomic: GACATCAGTGTTGgtatgtactt ... gtgtatatagGTGTGCCCTGATGGAAAAACCATCGAAGCTGAAGCTGCCCATGGCACGGTT
EST: GTTTTGGATCTTTGGGTTTGATGACATCAGTGTTG GTGTGCCCTGATGGAAAAACCATCGAAGCTGAAGCTGCCCATGGCACGGTTEST: gi|67023195|gb|CO451944.1|CO451944
genomic: GTTTTGGATCTTTGGGTTTGATGACATCAGTGTTGgtatgtactt ... gtgtatatagGTGTGCCCTGATGGAAAAACCATCGAAGCTGAAGCTGCCCATGGCACGGTT
EST: GTTTTGGATCTTTGGGTTTGATGACATCAGTGTTG GTGTGCCCTGATGGAAAAACCATCGAAGCTGAAGCTGCCCATGGCACGGTTEST: gi|33098319|gb|CF058279.1|CF058279
genomic: GTTTTGGATCTTTGGGTTTGATGACATCAGTGTTGgtatgtactt ... gtgtatatagGTGTGCCCTGATGGAAAAACCATCGAAGCTGAAGCTGCCCATGGCACGGTT
EST: GTTTTGGATCTTTGGGTTTGATGACATCAGTGTTG GTGTGCCCTGATGGAAAAACCATCGAAGCTGAAGCTGCCCATGGCACGGTTEST: gi|60358113|gb|DN225086.1|DN225086
genomic: GTTTTGGATCTTTGGGTTTGATGACATCAGTGTTGgtatgtactt ... gtgtatatagGTGTGCCCTGATGGAAAAACCATCGAAGCTGAAGCTGCCCATGGCACGGTT
EST: GTTTTGGATCTTTGGGTTTGATGACATCAGTGTTG GTGTGCCCTGATGGAAAAACCATCGAAGCTGAAGCTGCCCATGGCACGGTTEST: gi|67025371|gb|CO454120.1|CO454120
genomic: GTTTTGGATCTTTGGGTTTGATGACATCAGTGTTGgtatgtactt ... gtgtatatagGTGTGCCCTGATGGAAAAACCATCGAAGCTGAAGCTGCCCATGGCACGGTT
EST: GTTTTTGATCTTTGGGTTTGATGACATCAGTGTTG GTGTGCCCTGATGGAAAAACCATCGAAGCTGAAGCTGCCCATGGCACGGTTEST: gi|148957373|gb|EC903423.2|EC903423
genomic: GTTTTGGATCTTTGGGTTTGATGACATCAGTGTTGgtatgtactt ... gtgtatatagGTGTGCCCTGATGGAAAAACCATCGAAGCTGAAGCTGCCCATGGCACGGTT
EST: GTTTTGGATCTTTGGGTTTGATGACATCAGTGTTG GTGTGCCCTGATGGAAAAACCATCGAAGCTGAAGCTGCCCATGGCACGGTTEST: gi|74237579|gb|DT645493.1|DT645493
genomic: GTTTTGGATCTTTGGGTTTGATGACATCAGTGTTGgtatgtactt ... gtgtatatagGTGTGCCCTGATGGAAAAACCATCGAAGCTGAAGCTGCCCATGGCACGGTT
EST: GTTTTGGATCTTTGGGTTTGATGACATCAGTGTTG GTGTGCCCTGATGGAAAAACCATCGAAGCTGAAGCTGCCCATGGCACGGTTEST: gi|60346852|gb|DN213825.1|DN213825
genomic: GTTTTGGATCTTTGGGTTTGATGACATCAGTGTTGgtatgtactt ... gtgtatatagGTGTGCCCTGATGGAAAAACCATCGAAGCTGAAGCTGCCCATGGCACGGTT
EST: GTTTTGGATCTTTGGGTTTGATGACATCAGTGTTG GTGTGCCCTGATGGAAAAACCATCGAAGCTGAAGCTGCCCATGGCACGGTTEST: gi|60347229|gb|DN214202.1|DN214202
genomic: GTTTTGGATCTTTGGGTTTGATGACATCAGTGTTGgtatgtactt ... gtgtatatagGTGTGCCCTGATGGAAAAACCATCGAAGCTGAAGCTGCCCATGGCACGGTT
EST: GTTTTGGATCTTTGGGTTTGATGACATCAGTGTTG GTGTGCCCTGATGGAAAAACCATCGAAGCTGAAGCTGCCCATGGCACGGTTEST: gi|21891602|gb|BQ744815.1|BQ744815
genomic: GTTTTGGATCTTTGGGTTTGATGACATCAGTGTTGgtatgtactt ... gtgtatatagGTGTGCCCTGATGGAAAAACCATCGAAGCTGAAGCTGCCCATGGCACGGTT
EST: GTTTTGGGTCTTTGGGTTTGATGACATCAGTGTTG GTGTGCCCTGATGGAAAAACCATCGAAGCTGAAGCTGCCCATGGCACGGTTEST: gi|67019645|gb|CO448394.1|CO448394
genomic: GTTTTGGATCTTTGGGTTTGATGACATCAGTGTTGgtatgtactt ... gtgtatatagGTGTGCCCTGATGGAAAAACCATCGAAGCTGAAGCTGCCCATGGCACGGTT
EST: GTTTTGGATCTTTGGGTTTGATGACATCAGTGTTG GTGTGCCCTGATGGAAAAACCATCGAAGCTGAAGCTGCCCATGGCACGGTT
genomic: GTTTTGGATCTTTGGGTTTGATGACATCAGTGTTGgtatgtactt ... gtgtatatagGTGTGCCCTGATGGAAAAACCATCGAAGCTGAAGCTGCCCATGGCACGGTT
catgctttacattctcataaagatacgtgacgatgccaatctgttgtgtatatagGTGTGCCCTGATGGAAAAACCATCGAAGCTGAAGCTGCCCATGGCACGGTTACCCGTCATTTCCGTGTCCACCAGAAAGGAGGCGAAACCAGCACGAACA
ataaagata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtactttctgatttctgatttactttctcgactagatgtcatagttatttatgataaagaaccttatttttcgttgttgaattggtgtcacacctgcgcatgcaccttcagagatccatgctttacattctcataaagatacgtgacgatgccaatctgttgtgtatatagGTGTGCCCTGATGGAAAAACCATCGAAGCTGAAGCTGCCCATGGCACGGTTACCCGTCATTTCCGTGTCCACCAGAAAGGAGGCGAAACCAGCACGAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG