1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
...tgatatgggtgcctctttcagtttgtcagctgtatttctgcttgtcgcttttcagtgcagagtttctgttaacaatcatgttgtaccttttttaactcagGAATTACAATTGCTGAGTATTTCCGTGATATGGGCTACAACGTCAGTATGATGGCTGACTCCACCTCCCGGTGGGCTGAGGCATTGCGTGAGATCTCAGG
species | Zea mays |
transcript | GRMZM2G421857_T04 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TAACACATCAAACATGCCTGTCGCTGCTCGTGAAGCTTCCATTTACACAG GAATTACAATTGCTGAGTATTTCCGTGATATGGGCTACAACGTCAGTATGAEST: gi|31360193|gb|CD444550.1|CD444550
genomic: TAACACATCAAACATGCCTGTCGCTGCTCGTGAAGCTTCCATTTACACTGgtaaaaccct ... tttaactcagGAATTACAATTGCTGAGTATTTCCGTGATATGGGCTACAACGTCAGTATGA
EST: TAACACATCAAACATGCCTGTCGCTGCTCGTGAAGCTTCCATTTACACAG GAATTACAATTGCTGAGTATTTCCGTGATATGGGCTACAACGTCAGTATGAEST: gi|51592889|gb|CV072035.1|CV072035
genomic: TAACACATCAAACATGCCTGTCGCTGCTCGTGAAGCTTCCATTTACACTGgtaaaaccct ... tttaactcagGAATTACAATTGCTGAGTATTTCCGTGATATGGGCTACAACGTCAGTATGA
EST: TAACACATCAAACATGCCTGTCGCTGCTCGTGAAGCTTCCATTTACACAG GAATTACAATTGCTGAGTATTTCCGTGATATGGGCTACAACGTCAGTATGAEST: gi|61118945|gb|DN559906.1|DN559906
genomic: TAACACATCAAACATGCCTGTCGCTGCTCGTGAAGCTTCCATTTACACTGgtaaaaccct ... tttaactcagGAATTACAATTGCTGAGTATTTCCGTGATATGGGCTACAACGTCAGTATGA
EST: TAACACATCAAACATGCCTGTCGCTGCTCGTGAAGCTTCCATTTACACAG GAATTACAATTGCTGAGTATTTCCGTGATATGGGCTACAACGTCAGTATGAEST: gi|6012344|gb|AW061700.1|AW061700
genomic: TAACACATCAAACATGCCTGTCGCTGCTCGTGAAGCTTCCATTTACACTGgtaaaaccct ... tttaactcagGAATTACAATTGCTGAGTATTTCCGTGATATGGGCTACAACGTCAGTATGA
EST: TAACACATCAAACATGCCTGTCGCTGCTCGTGAAGCTTCCATTTACACTG GAATTACAATTGCTEST: gi|19437277|gb|BM953687.1|BM953687
genomic: TAACACATCAAACATGCCTGTCGCTGCTCGTGAAGCTTCCATTTACACTGgtaaaaccct ... tttaactcagGAATTACAATTGCT
EST: TAACACATCAAACATGCCTGTCGCTGCTCGTGAAGCTTCCATTTACACAG GAATTACAATTGCTGAGTATTTCCGTGATATGGGCTACAACGTCAGTATGA
genomic: TAACACATCAAACATGCCTGTCGCTGCTCGTGAAGCTTCCATTTACACTGgtaaaaccct ... tttaactcagGAATTACAATTGCTGAGTATTTCCGTGATATGGGCTACAACGTCAGTATGA
cgcttttcagtgcagagtttctgttaacaatcatgttgtaccttttttaactcagGAATTACAATTGCTGAGTATTTCCGTGATATGGGCTACAACGTCAGTATGATGGCTGACTCCACCTCCCGGTGGGCTGAGGCATTGCGTGAGATCTCAGG
ttttaac putative branch site (score: 2)
tacctttttt CT-rich tract
ttttttaact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgatatgggtgcctctttcagtttgtcagctgtatttctgcttgtcgcttttcagtgcagagtttctgttaacaatcatgttgtaccttttttaactcagGAATTACAATTGCTGAGTATTTCCGTGATATGGGCTACAACGTCAGTATGATGGCTGACTCCACCTCCCGGTGGGCTGAGGCATTGCGTGAGATCTCAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC