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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...accagctaggcttagtaatcctactgtttgttttttcttgcatgatcaaattttccttaatatttattgactcatgaaactaacctactatgctttccagATTATTTCTATTGTCAAGAGTAGAAATACAAAGGACAGAACCTTCGGAAATTTGGCCTTTGCGTGTGGATATGTCATGCTATTAGTCACAAATCAG

Basic information

species Zea mays
transcript GRMZM2G417217_T02
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G417217_T03 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os02g38250.1 (Oryza sativa), 3'ss of exon 10
-accagctaggcttagtaatcctactgt-ttgttttttcttgcatgatcaaattttccttaatatttattgactcatgaaactaacctactat-gctttccagATTATTTCTATTGTCAAGAGTAGAAATACAAAGGACAGAACCTTCGGAAATTTGGCCTTTGCGTGTGGATATGTCATGCTATTAGTCACAAATCAG
 |    ||||  |||| | |||||| |   |||   || |  ||| |   |||| | ||| |||||  |||||| |   | || ||||  ||| | ||| ||||||||||| || ||||||||||||||||||||||||| ||| || ||||||||||||||||| |||||||||||||||||  ||||||| |  |||
catgtactagaattag-agtcctaccgggctgtccattttgacat-actgaattctacttgatatt-gttgacttacatagctgacctgatattgatttgcagATTATTTCAATCGTCAAGAGTAGAAATACAAAGGACAAAACATTTGGAAATTTGGCCTTTGCTTGTGGATATGTCATGCTTCTAGTCACCAGCCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaaattttccttaatatttattgactcatgaaactaacctactatgctttccagATTATTTCTATTGTCAAGAGTAGAAATACAAAGGACAGAACCTTCGGAAATTTGGCCTTTGCGTGTGGATATGTCATGCTATTAGTCACAAATCAG
                                aactaac  putative branch site (score: 1)
                                             tgctttcc  putative PPT
     ttttccttaatattta  TA-rich tract