1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...tggacactgaatcacgctatgtttggtagcaaatgacatatagatgcacactcacatgtttctttctttctgttttttttttctttctaattctttgtagGAATACTATGACCCAAACCGTTCAATGCTGGAGTTGGTCTTTGCTCCTGCAGACGAATGGATTGGTCGAAGTGACACTGAAATCATCGATGCAACTATGG
species | Zea mays |
transcript | GRMZM2G410515_T01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GAGTTCACTTTTAAGTGTCTATGCAGACATGTCAGTAACCTGCAAG GAATACTATGACCCAAACCGTTCAATGCTGGAGTTGGTCTTTGCTCCTGCAEST: gi|211323425|gb|FL039625.1|FL039625
genomic: GAGTTCACTTTTAAGTGTCTATGCAGACATGTCAGTAACCTGCAAGgtaccaactt ... ttctttgtagGAATACTATGACCCAAACCGTTCAATGCTGGAGTTGGTCTTTGCTCCTGCA
EST: GAGTTCACTTTTAAGTGTCTATGCAGACATGTCAGTAACCTGCAAG GAATACTATGACCCAAACCGTTCAATGCTGGAGTTGGTCTTTGCTCCTGCAEST: gi|13558607|gb|BG549963.1|BG549963
genomic: GAGTTCACTTTTAAGTGTCTATGCAGACATGTCAGTAACCTGCAAGgtaccaactt ... ttctttgtagGAATACTATGACCCAAACCGTTCAATGCTGGAGTTGGTCTTTGCTCCTGCA
EST: GAGTTCACTTTTAAGTGTCTATGCAGACATGTCAGTAACCTGCAAG GAATACTATGACCCAAACCGTTCAATGCTGGAGTTGGTCTTTGCTCCTGCAEST: gi|4573271|gb|AI586830.1|AI586830
genomic: GAGTTCACTTTTAAGTGTCTATGCAGACATGTCAGTAACCTGCAAGgtaccaactt ... ttctttgtagGAATACTATGACCCAAACCGTTCAATGCTGGAGTTGGTCTTTGCTCCTGCA
EST: AGACATGTCAGTAACCTGCAAG GAATACTATGACCCAAACCGTTCAATGCTGGAGTTGGTCTTTGCTCCTGCAEST: gi|71765382|gb|DR963319.1|DR963319
genomic: AGACATGTCAGTAACCTGCAAGgtaccaactt ... ttctttgtagGAATACTATGACCCAAACCGTTCAATGCTGGAGTTGGTCTTTGCTCCTGCA
EST: GAGTTCACTTTTAAGTGTCTATGCAGACATGTCAGTAACCTGCAAG GAATACTATGACCCAAACCGTTCAATGCTGGAGTTGGTCTTTGCTCCTGCAEST: gi|31350094|gb|CD434451.1|CD434451
genomic: GAGTTCACTTTTAAGTGTCTATGCAGACATGTCAGTAACCTGCAAGgtaccaactt ... ttctttgtagGAATACTATGACCCAAACCGTTCAATGCTGGAGTTGGTCTTTGCTCCTGCA
EST: GAGTTCACTTTTAAGTGTCTATGCAGACATGTCAGTAACCTGCAAG GAATACTATGACCCAAACCGTTCAATGCTGGAGTTGGTCTTTGCTCCTGCA
genomic: GAGTTCACTTTTAAGTGTCTATGCAGACATGTCAGTAACCTGCAAGgtaccaactt ... ttctttgtagGAATACTATGACCCAAACCGTTCAATGCTGGAGTTGGTCTTTGCTCCTGCA
gcacactcacatgtttctttctttctgttttttttttctttctaattctttgtagGAATACTATGACCCAAACCGTTCAATGCTGGAGTTGGTCTTTGCTCCTGCAGACGAATGGATTGGTCGAAGTGACACTGAAATCATCGATGCAACTATGG
ttctaat putative branch site (score: 83)
tttctttctttctgtt CT-rich tract
ttttttttttctttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggacactgaatcacgctatgtttggtagcaaatgacatatagatgcacactcacatgtttctttctttctgttttttttttctttctaattctttgtagGAATACTATGACCCAAACCGTTCAATGCTGGAGTTGGTCTTTGCTCCTGCAGACGAATGGATTGGTCGAAGTGACACTGAAATCATCGATGCAACTATGG
- - cactgaa
- - - - - - - - - atgtttg
- - - - - - - - - - - - - - gcaaatg