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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgaacaacattgcagttagtatgtttggacagcttcatgtttcagattcaagagtgtaagcgtgtaataaatgtttgattcattcttatagGTTCTTCCAGTTTTTATCAAAGCTTTGCCACTAAAAGAAGATCATGAAGAATCAATGACTGTCTATGGTTGCGTCTGCGGTTTATTATTATCATCACATC

Basic information

species Zea mays
transcript GRMZM2G408305_T04
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G408305_T04 (Zea mays), 3'ss of exon 12
lower sequence: LOC_Os03g15540.1 (Oryza sativa), 3'ss of exon 7
gtttgaacaacattgcagttagtatgtttggacagcttcatgtttcagattcaagagtgtaagcgtgtaataaatgtt-tgattcattcttatagGTTCTTCCAGTTTTTATCAAAGCTTTGCCACTAAAAGAAGATCATGAAGAATCAATGACTGTCTATGGTTGCGTCTGCGGTTTATTATTATCATCACATC
||| | ||      | |  || ||| |||| | |  ||||  ||||| | |  ||||||   |  |   |   ||  | || || |||||||  ||| ||||| || ||||||||||||||||| ||||||||||||||||||||||| |||  ||||||| | || |||||   |||||||||||| |||||||
gttggcactctgcagtacataatat-tttgcataatttcagatttcaaacttcagagtgctggtctaatacgcattctgtgcttgattctta--gGTACTTCCGGTGTTTATCAAAGCTTTGCCGCTAAAAGAAGATCATGAAGAATCCATGGTTGTCTATAGCTGTGTCTGTAATTTATTATTATCTTCACATC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtttcagattcaagagtgtaagcgtgtaataaatgtttgattcattcttatagGTTCTTCCAGTTTTTATCAAAGCTTTGCCACTAAAAGAAGATCATGAAGAATCAATGACTGTCTATGGTTGCGTCTGCGGTTTATTATTATCATCACATC
                                    gtttgat  putative branch site (score: 5)
                                          ttcattctt  CT-rich tract
                            taataaatgtttgatt  TA-rich tract