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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacaagggtctttaaaagtttatttaatttctgattgatgttttgcatttaccaaagtgagttgtttcacgtttcagTATCTTCCTCATGTTGTCCCTCTCGTATTTTCTTCCTGCAACTTGGATGATGGTTCTGCTGTGGACATTGATGATGCCGATAGCATTGAAAATGGATTTG

Basic information

species Zea mays
transcript GRMZM2G408305_T01
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G408305_T01 (Zea mays), 3'ss of exon 12
lower sequence: GLYMA08G19960.1 (Glycine max), 3'ss of exon 9
--gtaacaagggtctttaaaagtttatttaatttctgattgatgttttgcatttaccaaagtgagttgtttcacgtttcagTATCTTCCTCATGTTGTCCCTCTCGTATTTTCTTCCTGCAACTTGGATGATGGTTCTGCTGTGGACATTGATGA---TGCCGATAGCATTGAAAATGGATTTG
   |    ||  ||  ||    ||  |   || |||   | |  | || || ||   |   ||  ||| |  ||     ||||||||||||||||||| ||||| | |||||||||||||||  | |||||||| ||||| || |||||||||||   || ||||   ||    |||||||   
gtatgcatagattcactattcattattcctatatcttgcttac-tcttacagttgaaattttgtattggtaaac-----agTATCTTCCTCATGTTGTGCCTCTTGCATTTTCTTCCTGCAATCTTGATGATGGCTCTGCGGTTGACATTGATGAGTGTGACGATGAAATCACTAATGGAT---

upper sequence: GRMZM2G408305_T01 (Zea mays), 3'ss of exon 12
lower sequence: GLYMA15G05090.1 (Glycine max), 3'ss of exon 9
gtaacaagggtctttaaaagtttatttaatttctgattgatgttttgcatttaccaaagtgagttgtttcacgttt-cagTATCTTCCTCATGTTGTCCCTCTCGTATTTTCTTCCTGCAACTTGGATGATGGTTCTGCTGTGGACATTGATGA---TGCCGATAGCATTGAAAATGGATTTG
|||   |  |  || |  | || |||  ||| ||   || || ||  |  ||||       | ||| |    ||   ||||||||||||| |||||| ||||| | |||||||||||||||  | |||||||| ||||| || |||||||||||    | ||||   || |  |||||||   
gtatgcatagatttcacta-ttcatt--attcctatatgttgctt-actcttacagttaaaatttggtattggtaaacagTATCTTCCTCGTGTTGTGCCTCTTGCATTTTCTTCCTGCAATCTTGATGATGGCTCTGCGGTTGACATTGATGAGTGCGACGATGAAATCGCTAATGGAT---

upper sequence: GRMZM2G408305_T01 (Zea mays), 3'ss of exon 12
lower sequence: Vv12s0034g02160.t01 (Vitis vinifera), 3'ss of exon 9
--gtaacaagggtctttaaaagtttatttaatttc-tgattgatgtt--ttgcatttac-caaagtgagttgtttcacgtttcagTATCTTCCTCATGTTGTCCCTCTCGTATTTTCTTCCTGCAACTTGGATGATGGTTCTGCTGTGGACATTGATGA---TGCCGATAGCATTGAAAATGGATTTG
   | |||  | ||| |   | || | || || |  | |||  | ||       ||||     |   |||| |||       ||||||||||| |||||||| ||||| | |||||| ||||||||  | |||||||||||||||||||||||||||||   ||  |||   |     |||||||   
gtattacacagttctatttgaattaagtttatgtgataatttcttttagccatgtttatgtgtaaaaagttattttggcaaacagTATCTTCCACATGTTGTACCTCTGGCATTTTCGTCCTGCAATCTTGATGATGGTTCTGCTGTGGACATTGATGAATCTGATGATGAAAACATCAATGGAT---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211006824|gb|FL318409.1|FL318409
EST:     ATGGTTTCTTTAGTAACGTTGCTGAAATTTTGGGTGATAGTTTTACACAG                         TATCTTCCTCATGTTGTCCCTCTCGTATTTTCTTCCTGCAACTTGGATGAT
genomic: ATGGTTTCTTTAGTAACGTTGCTGAAATTTTGGGTGATAGTTTTACACAGgtaacaaggg ... cacgtttcagTATCTTCCTCATGTTGTCCCTCTCGTATTTTCTTCCTGCAACTTGGATGAT
EST: gi|211090668|gb|FL308863.1|FL308863
EST:     ATGGTTTCTTTAGTAACGTTGCTGAAATTTTGGGTGATAGTTTTACACAG                         TATCTTCCTCATGTTGTCCCTCTCGTATTTTCTTCCTGCAACTTGGATGAT
genomic: ATGGTTTCTTTAGTAACGTTGCTGAAATTTTGGGTGATAGTTTTACACAGgtaacaaggg ... cacgtttcagTATCTTCCTCATGTTGTCCCTCTCGTATTTTCTTCCTGCAACTTGGATGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttaatttctgattgatgttttgcatttaccaaagtgagttgtttcacgtttcagTATCTTCCTCATGTTGTCCCTCTCGTATTTTCTTCCTGCAACTTGGATGATGGTTCTGCTGTGGACATTGATGATGCCGATAGCATTGAAAATGGATTTG
                                       ttgtttc  CT-rich tract
               atgtttt  TA-rich tract