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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagattgggtcctcacatcaacttaactacttaagtgtgaaaaggcagattgggtcctcaccattgtgttgcgcacatgacagGTCGCCAGAACTGGACGAGTAGCACTGGTCCGCGAATCGAAGGTGGACTCCAAGTACCTCCGCGGCTACTCTCTTCCACTGTAGCCTTGCAGTCGTGATG

Basic information

species Zea mays
transcript GRMZM2G407044_T02
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G407044_T03 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os02g39570.1 (Oryza sativa), 3'ss of exon 11
------------gtagattgggtcctcacatc-aacttaactacttaagtgtgaaaaggcagattgggtcctcaccattg--tgttgcgcacatg---acagGTCGCCAGAACTGGACGAGTAGCACTGGTCCGCGAATCGAAGGTGGACTCCAAGTACCTCCGCGGCTACTCTCTTCCACTGTAG-CCTTGCAGTCGTGATG
             |||||   |     | |||  |  |   ||   |  ||| | |   |    |   ||||| | | ||  | || ||  ||||   ||||||||||||||| || ||||| || ||||||||||||||    || || ||||||||||| || ||||||||  ||||  ||||  ||  |   | ||||  
cctcactattttttagataatggatagaaatccgatctctatatccacatgtaatatacccagctt--tcctcgctaatgcatattccgtccatgaccacagGTCGCCAGAACAGGGCGAGTGGCGCTGGTCCGCGAATCCGGTGTCGATTCCAAGTACCTTCGTGGCTACTCCTTTCCGTTGTAATCCCAGGTCTTGTGAG-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89253086|gb|DY624872.1|DY624872
EST:     ACAAGATGGTTGCACTACAAAGGTTATTGGAGCCATATGGCATCTGTGAG                         GTCGCCAGAACTGGACGAGTAGCACTGGTCCGCGAATCGAAGGTGGACTCC
genomic: ACAAGATGGTTGCACTACAAAGGTTATTGGAGCCATATGGCATCTGTGAGgtagattggg ... cacatgacagGTCGCCAGAACTGGACGAGTAGCACTGGTCCGCGAATCGAAGGTGGACTCC
EST: gi|211452062|gb|FL278247.1|FL278247
EST:     ACAAGATGGTTGCACTACAAAGGTTATTGGAGCCATATGGCATCTGTGAG                         GTCGCCAGAACTGGACGAGTAGCACTGGTCCGCGAATCGAAGGTGGACTCC
genomic: ACAAGATGGTTGCACTACAAAGGTTATTGGAGCCATATGGCATCTGTGAGgtagattggg ... cacatgacagGTCGCCAGAACTGGACGAGTAGCACTGGTCCGCGAATCGAAGGTGGACTCC
EST: gi|211122006|gb|FL444944.1|FL444944
EST:     ACAAGATGGTTGCACTACAAAGGTTATTGGAGCCATATGGCATCTGTGAG                         GTCGCCAGAACTGGACGAGTAGCACTGGTCCGCGAATCGAAGGTGGACTCC
genomic: ACAAGATGGTTGCACTACAAAGGTTATTGGAGCCATATGGCATCTGTGAGgtagattggg ... cacatgacagGTCGCCAGAACTGGACGAGTAGCACTGGTCCGCGAATCGAAGGTGGACTCC
EST: gi|24934868|gb|CA453086.1|CA453086
EST:     ACAAGATGGTTGCACTACAAAGGTTATTGGAGCCATATGGCATCTGTGAG                         GTCGCCAGAACTGGACGAGTAGCACTGGTCCGCGAATCGAAGGTGGACTCC
genomic: ACAAGATGGTTGCACTACAAAGGTTATTGGAGCCATATGGCATCTGTGAGgtagattggg ... cacatgacagGTCGCCAGAACTGGACGAGTAGCACTGGTCCGCGAATCGAAGGTGGACTCC
EST: gi|60338155|gb|DN205128.1|DN205128
EST:     ACAAGATGGTTGCACTACAAAGGTTATTGGAGCCATATGGCATCTGTGAG                         GTCGCCAGAACTGGACGAGTAGCACTGGTCCGCGAATCGAAGGTGGACTCC
genomic: ACAAGATGGTTGCACTACAAAGGTTATTGGAGCCATATGGCATCTGTGAGgtagattggg ... cacatgacagGTCGCCAGAACTGGACGAGTAGCACTGGTCCGCGAATCGAAGGTGGACTCC
EST: gi|211132732|gb|FL016680.1|FL016680
EST:     ACAAGATGGTTGCACTACAAAGGTTATTGGAGCCATATGGCATCTGTGAG                         GTCGCCAGAACTGGACGAGTAGCACTGGTCCGCGAATCGAAGGTGGACTCC
genomic: ACAAGATGGTTGCACTACAAAGGTTATTGGAGCCATATGGCATCTGTGAGgtagattggg ... cacatgacagGTCGCCAGAACTGGACGAGTAGCACTGGTCCGCGAATCGAAGGTGGACTCC
EST: gi|149087823|gb|EE287139.2|EE287139
EST:     ACAAGATGGTTGCACTACAAAGGTTATTGGAGCCATATGGCATCTGTGAG                         GTCGCCAGAACTGGACGAGTAGCACTGGTCCGCGAATCGAAGGTGGACTCC
genomic: ACAAGATGGTTGCACTACAAAGGTTATTGGAGCCATATGGCATCTGTGAGgtagattggg ... cacatgacagGTCGCCAGAACTGGACGAGTAGCACTGGTCCGCGAATCGAAGGTGGACTCC
EST: gi|211033398|gb|FL443777.1|FL443777
EST:     ACAAGATGGTTGCACTACAAAGGTTATTGGAGCCATATGGCATCTGTGAG                         GTCGCCAGAACTGGACGAGTAGCACTGGTCCGCGAATCGAAGGTGGACTCC
genomic: ACAAGATGGTTGCACTACAAAGGTTATTGGAGCCATATGGCATCTGTGAGgtagattggg ... cacatgacagGTCGCCAGAACTGGACGAGTAGCACTGGTCCGCGAATCGAAGGTGGACTCC
EST: gi|32940948|gb|CF045767.1|CF045767
EST:     ACAAGATGGTTGCACTACAAAGGTTATTGGAGCCATATGGCATCTGTGAG                         GTCGCCAGAACTGGACGAGTAGCACTGGTCCGCGAATCGAAGGTGGACTCC
genomic: ACAAGATGGTTGCACTACAAAGGTTATTGGAGCCATATGGCATCTGTGAGgtagattggg ... cacatgacagGTCGCCAGAACTGGACGAGTAGCACTGGTCCGCGAATCGAAGGTGGACTCC
EST: gi|211350147|gb|FL469218.1|FL469218
EST:     ACAAGATGGTTGCACTACAAAGGTTATTGGAGCCATATGGCATCTGTGAG                         GTCGCCAGAACTGGACGAGTAGCACTGGTCCGCGAATCGAAGGTGGACTCC
genomic: ACAAGATGGTTGCACTACAAAGGTTATTGGAGCCATATGGCATCTGTGAGgtagattggg ... cacatgacagGTCGCCAGAACTGGACGAGTAGCACTGGTCCGCGAATCGAAGGTGGACTCC
EST: gi|116818053|gb|EC860984.1|EC860984
EST:     ACAAGATGGTTGCACTACAAAGGTTATTGGAGCCATATGGCATCTGTGAG                         GTCGCCAGAACTGGACGAGTAGCACTGGTCCGCGAATCGAAGGTGGACTCC
genomic: ACAAGATGGTTGCACTACAAAGGTTATTGGAGCCATATGGCATCTGTGAGgtagattggg ... cacatgacagGTCGCCAGAACTGGACGAGTAGCACTGGTCCGCGAATCGAAGGTGGACTCC
EST: gi|211452063|gb|FL278248.1|FL278248
EST:     ACAAGATGGTTGCACTACAAAGGTTATTGGAGCCATATGGCATCTGTGAG                         GTCGCCAGAACTGGACGAGTAGCACTGGTCCGCGAATCGAAGGTGGACTCC
genomic: ACAAGATGGTTGCACTACAAAGGTTATTGGAGCCATATGGCATCTGTGAGgtagattggg ... cacatgacagGTCGCCAGAACTGGACGAGTAGCACTGGTCCGCGAATCGAAGGTGGACTCC
EST: gi|32793555|gb|CD945791.1|CD945791
EST:     ACAAGATGGTTGCACTACAAAGGGTATTGGAGCCATATGGCATCTGTGAG                         GTCGCCAGAACTGGACGAGTAGCACTGGTCCGCGAATCGAAGGTGGACTCC
genomic: ACAAGATGGTTGCACTACAAAGGTTATTGGAGCCATATGGCATCTGTGAGgtagattggg ... cacatgacagGTCGCCAGAACTGGACGAGTAGCACTGGTCCGCGAATCGAAGGTGGACTCC
EST: gi|78122763|gb|DV541147.1|DV541147
EST:     ACAAGATGGTTGCACTACAAAGGTTATTGGAGCCATATGGCATCTGTGAG                         GTCGCCAGAACTGGACGAGTAGCACTGGTCCGCGAATCGAAGGTGGACTCC
genomic: ACAAGATGGTTGCACTACAAAGGTTATTGGAGCCATATGGCATCTGTGAGgtagattggg ... cacatgacagGTCGCCAGAACTGGACGAGTAGCACTGGTCCGCGAATCGAAGGTGGACTCC
EST: gi|60343820|gb|DN210793.1|DN210793
EST:     ACAAGATGGTTGCACTACAAAGGTTATTGGAGCCATATGGCATCTGTGAG                         GTCGCCAGAACTGGACGAGTAGCACTGGTCCGCGAATCGAAGGTGGACTCC
genomic: ACAAGATGGTTGCACTACAAAGGTTATTGGAGCCATATGGCATCTGTGAGgtagattggg ... cacatgacagGTCGCCAGAACTGGACGAGTAGCACTGGTCCGCGAATCGAAGGTGGACTCC
EST: gi|60340849|gb|DN207822.1|DN207822
EST:     ACAAGATGGTTGCACTACAAAGGTTATTGGAGCCATATGGCATCTGTGAG                         GTCGCCAGAACTGGACGAGTAGCACTGGTCCGCGAATCGAAGGTGGACTCC
genomic: ACAAGATGGTTGCACTACAAAGGTTATTGGAGCCATATGGCATCTGTGAGgtagattggg ... cacatgacagGTCGCCAGAACTGGACGAGTAGCACTGGTCCGCGAATCGAAGGTGGACTCC
EST: gi|24773364|gb|CA408618.1|CA408618
EST:     ACAAGATGGTTGCACTACAAAGGTTATTGGAGCCATATGGCATCTGTGAG                         GTCGCCAGAACTGGACGAGTAGCACTGGTCCGCGAATCGAAGGTGGACTCC
genomic: ACAAGATGGTTGCACTACAAAGGTTATTGGAGCCATATGGCATCTGTGAGgtagattggg ... cacatgacagGTCGCCAGAACTGGACGAGTAGCACTGGTCCGCGAATCGAAGGTGGACTCC
EST: gi|211122005|gb|FL444943.1|FL444943
EST:     ACAAGATGGTTGCMCTACAAAGGTTATTGGAGCCATATGGCATYTGTGAG                         GTCGCCAGAACTGGACGAGTAGCACTGGTCCGCGAATCGAAGGTGGACTCC
genomic: ACAAGATGGTTGCACTACAAAGGTTATTGGAGCCATATGGCATCTGTGAGgtagattggg ... cacatgacagGTCGCCAGAACTGGACGAGTAGCACTGGTCCGCGAATCGAAGGTGGACTCC
EST: gi|148949306|gb|EC894757.2|EC894757
EST:     ACAAGATGGTTGCACTACAAAGGTTATTGGAGCCATATGGCATCTGTGAG                         GTCGCCAGAACTGGACGAGTAGCACTGGTCCGCGAATCGAAGGTGGACTCC
genomic: ACAAGATGGTTGCACTACAAAGGTTATTGGAGCCATATGGCATCTGTGAGgtagattggg ... cacatgacagGTCGCCAGAACTGGACGAGTAGCACTGGTCCGCGAATCGAAGGTGGACTCC
EST: gi|211452064|gb|FL278249.1|FL278249
EST:     ACAAGATGGTTGCACTACAAAGGTTATTGGAGCCATATGGCATCTGTGAG                         GTCGCCAGAACTGGACGAGTAGCACTGGTCCGCGAATCGAAGGTGGACTCC
genomic: ACAAGATGGTTGCACTACAAAGGTTATTGGAGCCATATGGCATCTGTGAGgtagattggg ... cacatgacagGTCGCCAGAACTGGACGAGTAGCACTGGTCCGCGAATCGAAGGTGGACTCC
EST: gi|211132731|gb|FL016679.1|FL016679
EST:     ACAAGATGGTTGCACTACAAAGGTTATTGGAGCCATATGGCATCTGTGAG                         GTCGCCAGAACTGGACGAGTAGCACTGGTCCGCGAATCGAAGGTGGACTCC
genomic: ACAAGATGGTTGCACTACAAAGGTTATTGGAGCCATATGGCATCTGTGAGgtagattggg ... cacatgacagGTCGCCAGAACTGGACGAGTAGCACTGGTCCGCGAATCGAAGGTGGACTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acttaagtgtgaaaaggcagattgggtcctcaccattgtgttgcgcacatgacagGTCGCCAGAACTGGACGAGTAGCACTGGTCCGCGAATCGAAGGTGGACTCCAAGTACCTCCGCGGCTACTCTCTTCCACTGTAGCCTTGCAGTCGTGATG
                          tcctcac  putative branch site (score: 2)