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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgccgaaatgaacatagctttaatccctattttttgtcagaaaactccggttacttagtttcctatttttccccttcagGACAAGAGCTTATCGAATGGAATGTTCTTCCTTGATCTTCTTAGCACAGTACAGCCAAGGGTTGTGAACTGGAAAGTTGTTACTAAAGGGGAAACTG

Basic information

species Zea mays
transcript GRMZM2G382341_T01
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G382341_T01 (Zea mays), 3'ss of exon 12
lower sequence: LOC_Os02g48740.1 (Oryza sativa), 3'ss of exon 12
gtgccga-aatgaacatagctttaatccctattttttgtcagaaaactccggttacttagtttcctatttttccccttcagGACAAGAGCTTATCGAATGGAATGTTCTTCCTTGATCTTCTTAGCACAGTACAGCCAAGGGTTGTGAACTGGAAAGTTGTTACTAAAGGGGAAACTG
|||     |||     |    ||| |    |||| |||| ||| |||||| |||| | | ||| ||  | ||| |  |||||||||||||||||| ||||||  ||| |||||||| ||||||||  ||||||| || |||||||| ||||||||||||||||| || ||||||  ||
gtgttattaatttctgtttaattagttttaatttgttgttagataactccagttaataaattttcttatcttctc--tcagGACAAGAGCTTATCAAATGGACGGTTTTTCCTTGAACTTCTTAGTGCAGTACAACCGAGGGTTGTCAACTGGAAAGTTGTTACAAAGGGGGAAGATG

upper sequence: GRMZM2G382341_T01 (Zea mays), 3'ss of exon 12
lower sequence: GLYMA14G00820.1 (Glycine max), 3'ss of exon 11
----------gtgccgaaatgaac------atagctttaatccctattttt-tgtcagaaaact-ccggttact--tagtttcctatttttccccttcagGACAAGAGCTTATCGAATGGAATGTTCTTCCTTGATCTTCTTAGCACAGTACAGCCAAGGGTTGTGAACTGGAAAGTTGTTACTAAAGGGGAAACTG
           ||  |||| | ||       |     | ||   |  |||  |||  ||  ||  |   ||  |  || ||   | || | |  | |||||| ||||   | ||   |||  | ||||||||||| ||| | ||  | ||  ||||||||||||| |||||||   |||||||||||||||| ||||
aggcttttgaatgaagaaaaggactgttcagtgtacatgatggttgctttgatgttggactacaactcattgttgatatttatgtgttgtgcttcatcagGATAAGAATCTTTCTGGTGGCGTTTTCTTCCTTGAGCTTTTGAGTGCTGTGGAGCCAAGGGTTGTCAACTGGAGTCTTGTTACTAAAGGGGAGACTG

upper sequence: GRMZM2G382341_T01 (Zea mays), 3'ss of exon 12
lower sequence: Vv12s0059g00560.t01 (Vitis vinifera), 3'ss of exon 11
--gtgccgaaatgaacatagctttaatccc-tattttttgtcagaaaactccggttacttagtttcctatttt----tccccttcagGACAAGAGCTTATCGAATGGAATGTTCTTCCTTGATCTTCTTAGCACAGTACAGCCAAGGGTTGTGAACTGGAAAGTTGTTACTAAAGGGGAAACTG
     |    ||| |   |  | | || |  || |   | | |   |     | ||  |  || |   ||        |   || ||||||||| | | |||||||| || ||||||||||| ||||||||  | ||  ||||||||||||| ||||||||  || |||| || || |||| ||
gtaatcttccatgcattgacttcttatgctatagtaaatttaactgatgattgattgttaggtgtttgatgcaacaaccttttttagGACAAGAACCTTTCGAATGGGATTTTCTTCCTTGAGCTTCTTAGTGCTGTGGAGCCAAGGGTTGTCAACTGGAACCTTATTACAAAGGGTGAAAGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccctattttttgtcagaaaactccggttacttagtttcctatttttccccttcagGACAAGAGCTTATCGAATGGAATGTTCTTCCTTGATCTTCTTAGCACAGTACAGCCAAGGGTTGTGAACTGGAAAGTTGTTACTAAAGGGGAAACTG
                          ttacttagtttcctat  CT-rich tract
                                       tattttt  TA-rich tract