1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...aataagaaaatacatacagatattttgaagttctctccatgctttttaaagcttgtaatcaattttgtattattgccttatgatattttttcttatgcagATCAAATGTAGAAATGTCATTGCTCTTGCTGCAACCAATATGGATGAACTAGACACCGAGTGGGATTGTCTTCTAGGTACCCAGGAGAGTGGTCTAATGC
species | Zea mays |
transcript | GRMZM2G381933_T03 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: CAGAAGGTATTACAGAATTACTGCATCACAAAACGCTACCATTGCCATTG ATCAAATGTAGAAATGTCATTGCTCTTGCTGCAACCAATATGGATGAACTAEST: gi|33097429|gb|CF057389.1|CF057389
genomic: CAGAAGGTATTACAGAATTACTGCATCACAAAACGCTACCATTGCCATTGgtatgttctt ... tcttatgcagATCAAATGTAGAAATGTCATTGCTCTTGCTGCAACCAATATGGATGAACTA
EST: CAGAAGGTATTACAGAATTACTGCATCACAAAACGCTACCATTGCCATTG ATCAAATGTAGAAATGTCATTGCTCTTGCTGCAACCAATATGGATGAACTAEST: gi|60359540|gb|DN226513.1|DN226513
genomic: CAGAAGGTATTACAGAATTACTGCATCACAAAACGCTACCATTGCCATTGgtatgttctt ... tcttatgcagATCAAATGTAGAAATGTCATTGCTCTTGCTGCAACCAATATGGATGAACTA
EST: CAGAAGGTATTACAGAATTACTGCATCACAAAACGCTACCATTGCCATTG ATCAAATGTAGAAATGTCATTGCTCTTGCTGCAACCAATATGGATGAACTAEST: gi|60396268|gb|DN229137.1|DN229137
genomic: CAGAAGGTATTACAGAATTACTGCATCACAAAACGCTACCATTGCCATTGgtatgttctt ... tcttatgcagATCAAATGTAGAAATGTCATTGCTCTTGCTGCAACCAATATGGATGAACTA
EST: CAGAAGGTATTACAGAATTACTGCATCACAAAACGCTACCATTGCCATTG ATCAAATGTAGAAATGTCATTGCTCTTGCTGCAACCAATATGGATGAACTAEST: gi|60351624|gb|DN218597.1|DN218597
genomic: CAGAAGGTATTACAGAATTACTGCATCACAAAACGCTACCATTGCCATTGgtatgttctt ... tcttatgcagATCAAATGTAGAAATGTCATTGCTCTTGCTGCAACCAATATGGATGAACTA
EST: CAGAAGGTATTACAGAATTACTGCATCACAAAACGCTACCATTGCCATTG ATCAAATGTAGAAATGTCATTGCTCTTGCTGCAACCAATATGGATGAACTAEST: gi|60394781|gb|DN227651.1|DN227651
genomic: CAGAAGGTATTACAGAATTACTGCATCACAAAACGCTACCATTGCCATTGgtatgttctt ... tcttatgcagATCAAATGTAGAAATGTCATTGCTCTTGCTGCAACCAATATGGATGAACTA
EST: CAGAAGGTATTACAGAATTACTGCATCACAAAACGCTACCATTGCCATTG ATCAAATGTAGAAATGTCATTGCTCTTGCTGCAACCAATATGGATGAACTAEST: gi|71767359|gb|DR965296.1|DR965296
genomic: CAGAAGGTATTACAGAATTACTGCATCACAAAACGCTACCATTGCCATTGgtatgttctt ... tcttatgcagATCAAATGTAGAAATGTCATTGCTCTTGCTGCAACCAATATGGATGAACTA
EST: CAGAAGGTATTACAGAATTACTGCATCACAAAACGCTACCATTGCCATTG ATCAAATGTAGAAATGTCATTGCTCTTGCTGCAACCAATATGGATGAACTAEST: gi|33285569|gb|CF075364.1|CF075364
genomic: CAGAAGGTATTACAGAATTACTGCATCACAAAACGCTACCATTGCCATTGgtatgttctt ... tcttatgcagATCAAATGTAGAAATGTCATTGCTCTTGCTGCAACCAATATGGATGAACTA
EST: CAGAAGGTATTACAGAATTACTGCATCACAAAACACTACCATTGCCATTG ATCAAATGTAGAAATGTCATTGCTCTTGCTGCAACCAATATGGATGAACTAEST: gi|71767360|gb|DR965297.1|DR965297
genomic: CAGAAGGTATTACAGAATTACTGCATCACAAAACGCTACCATTGCCATTGgtatgttctt ... tcttatgcagATCAAATGTAGAAATGTCATTGCTCTTGCTGCAACCAATATGGATGAACTA
EST: CAGAAGGTATTACAGAATTACTGCATCACAAAACGCTACCATTGCCATTG ATCAAATGTAGAAATGTCATTGCTCTTGCTGCAACCAATATGGATGAACTAEST: gi|74242521|gb|DT650435.1|DT650435
genomic: CAGAAGGTATTACAGAATTACTGCATCACAAAACGCTACCATTGCCATTGgtatgttctt ... tcttatgcagATCAAATGTAGAAATGTCATTGCTCTTGCTGCAACCAATATGGATGAACTA
EST: CAGAAGGTATTACAGAATTACTGCATCACAAAACGCTACCATTGCCATTG ATCAAATGTAGAAATGTCATTGCTCTTGCTGCAACCAATATGGATGAACTAEST: gi|211076372|gb|FL154532.1|FL154532
genomic: CAGAAGGTATTACAGAATTACTGCATCACAAAACGCTACCATTGCCATTGgtatgttctt ... tcttatgcagATCAAATGTAGAAATGTCATTGCTCTTGCTGCAACCAATATGGATGAACTA
EST: CAGAAGGTATTACAGAATTACTGCATCACAAAACGCTACCATTGCCTTTG ATCAAATGTAGAAATGTCATTGCTCTTGCTGCAACCAATATGGATGAACTAEST: gi|78087486|gb|DV515879.1|DV515879
genomic: CAGAAGGTATTACAGAATTACTGCATCACAAAACGCTACCATTGCCATTGgtatgttctt ... tcttatgcagATCAAATGTAGAAATGTCATTGCTCTTGCTGCAACCAATATGGATGAACTA
EST: CAGAAGGTATTACAGAATTACTGCATCACAAAACGCTACCATTGCCATTG ATCAAATGTAGAAATGTCATTGCTCTTGCTGCAACCAATATGGATGAACTAEST: gi|8516501|gb|BE123226.1|BE123226
genomic: CAGAAGGTATTACAGAATTACTGCATCACAAAACGCTACCATTGCCATTGgtatgttctt ... tcttatgcagATCAAATGTAGAAATGTCATTGCTCTTGCTGCAACCAATATGGATGAACTA
EST: CAGAAGGTATTACAGAATTACTGCATCACAAAACGCTACCATTGCCATTG ATCAAATGTAGAAATGTCATTGCTCTTGCTGCAACCAATATGGATGAACTAEST: gi|67023704|gb|CO452453.1|CO452453
genomic: CAGAAGGTATTACAGAATTACTGCATCACAAAACGCTACCATTGCCATTGgtatgttctt ... tcttatgcagATCAAATGTAGAAATGTCATTGCTCTTGCTGCAACCAATATGGATGAACTA
EST: CAGAAGGTATTACAGAATTACTGCATCACAAAACGCTACCATTGCCTTTG ATCAAATGTAGAAATGTCATTGCTCTTGCTGCAACCAATATGGATGAACTA
genomic: CAGAAGGTATTACAGAATTACTGCATCACAAAACGCTACCATTGCCATTGgtatgttctt ... tcttatgcagATCAAATGTAGAAATGTCATTGCTCTTGCTGCAACCAATATGGATGAACTA
ttaaagcttgtaatcaattttgtattattgccttatgatattttttcttatgcagATCAAATGTAGAAATGTCATTGCTCTTGCTGCAACCAATATGGATGAACTAGACACCGAGTGGGATTGTCTTCTAGGTACCCAGGAGAGTGGTCTAATGC
tattttttctt CT-rich tract
ttgtaatcaattttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aataagaaaatacatacagatattttgaagttctctccatgctttttaaagcttgtaatcaattttgtattattgccttatgatattttttcttatgcagATCAAATGTAGAAATGTCATTGCTCTTGCTGCAACCAATATGGATGAACTAGACACCGAGTGGGATTGTCTTCTAGGTACCCAGGAGAGTGGTCTAATGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA