1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtcagcattgcaccttcatattcttcatgggccattacgtttcatatatgcagctcaaatgatctaataaataaattgtacatgtatcggtctcagGATGAGGAAGACGATGAGAAGGCAGACGAGGACAAGGCCGACTCTGATGCCGAGGATGGCAAGGATTCTGATGATGAGAAGCAC
species | Zea mays |
transcript | GRMZM2G358059_T01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GATGCCGCCAAGGGTGGGGATGATGAGGATGATGACCTAGAG GATGAGGAAGACGATGAGAAGGCAGACGAGGACAAGGCCGACTCTGATGCCEST: gi|84980101|gb|DW530450.1|DW530450
genomic: GATGCCGCCAAGGGTGGGGATGATGAGGATGATGACCTAGAGgtcagcattg ... tcggtctcagGATGAGGAAGACGATGAGAAGGCAGACGAGGACAAGGCCGACTCTGATGCC
EST: GATGCCGCCAAGGGTGGGGATGATGAGGATGATGACCTAGAG GATGAGGAAGACGATGAGAAGGCAGACGAGGACAAGGCCGACTCTGATGCCEST: gi|86467986|gb|DY234356.1|DY234356
genomic: GATGCCGCCAAGGGTGGGGATGATGAGGATGATGACCTAGAGgtcagcattg ... tcggtctcagGATGAGGAAGACGATGAGAAGGCAGACGAGGACAAGGCCGACTCTGATGCC
EST: GATGCCGCCAAGGGTGGGGATGATGAGGATGATGACCTAGAG GATGAGGAAGACGATGAGAAGGCAGACGAGGACAAGGCCGACTCTGATGCCEST: gi|149074502|gb|EE162898.2|EE162898
genomic: GATGCCGCCAAGGGTGGGGATGATGAGGATGATGACCTAGAGgtcagcattg ... tcggtctcagGATGAGGAAGACGATGAGAAGGCAGACGAGGACAAGGCCGACTCTGATGCC
EST: GATGCCGCCAAGGGTGGGGATGATGAGGATGATGACCTAGAG GATGAGGAAGACGATGAGAAGGCAGACGAGGACAAGGCCGACTCTGATGCCEST: gi|14190892|gb|BG833122.1|BG833122
genomic: GATGCCGCCAAGGGTGGGGATGATGAGGATGATGACCTAGAGgtcagcattg ... tcggtctcagGATGAGGAAGACGATGAGAAGGCAGACGAGGACAAGGCCGACTCTGATGCC
EST: GATGCCGCCAAGGGCTGGGGATGATGAGGATGATGACCTAGAG GATGCAGGAAGACGATGAGAAGGCAGACGAGGCACAAGGCCGACTCTGATGEST: gi|7162446|gb|AW520068.1|AW520068
genomic: GATGCCGCCAAGGG-TGGGGATGATGAGGATGATGACCTAGAGgtcagcattg ... tcggtctcagGATG-AGGAAGACGATGAGAAGGCAGACGAGG-ACAAGGCCGACTCTGATG
EST: GATGCCGCCAAGGGTGGGGATGATGAGGATGATGACCTAGAG GATGAGGAAGACGATGAGAAGGCAGACGAGGACAAGGCCGACTCTGATGCCEST: gi|14190894|gb|BG833124.1|BG833124
genomic: GATGCCGCCAAGGGTGGGGATGATGAGGATGATGACCTAGAGgtcagcattg ... tcggtctcagGATGAGGAAGACGATGAGAAGGCAGACGAGGACAAGGCCGACTCTGATGCC
EST: GATGCCGCCAAGGGTGGGGATGATGAGGATGATGACCTAGAG GATGAGGAAGACGATGAGAAGGCAGACGAGGACAAGGCCGACTCTGATGCCEST: gi|37377946|gb|CF625620.1|CF625620
genomic: GATGCCGCCAAGGGTGGGGATGATGAGGATGATGACCTAGAGgtcagcattg ... tcggtctcagGATGAGGAAGACGATGAGAAGGCAGACGAGGACAAGGCCGACTCTGATGCC
EST: GATGCCGCCAAGGGTGGGGATGATGAGGATGATGACCTAGAG GATGAGGAAGACGATGAGAAGGCAGACGAGGACAAGGCCGACTCTGATGCCEST: gi|33096251|gb|CF056245.1|CF056245
genomic: GATGCCGCCAAGGGTGGGGATGATGAGGATGATGACCTAGAGgtcagcattg ... tcggtctcagGATGAGGAAGACGATGAGAAGGCAGACGAGGACAAGGCCGACTCTGATGCC
EST: GATGCCGCCAAGGGTGGGGATGATGAGGATGATGACCTAGAG GATGAGGAAGACGATGAGAAGGCAGACGAGGACAAGGCCGACTCTEST: gi|149074540|gb|EE162939.2|EE162939
genomic: GATGCCGCCAAGGGTGGGGATGATGAGGATGATGACCTAGAGgtcagcattg ... tcggtctcagGATGAGGAAGACGATGAGAAGGCAGACGAGGACAAGGCCGACTCT
EST: GATGCCGCCAAGGGTGGGGATGATGAGGATGATGACCTAGAG GATGAGGAAGACGATGAGAAGGCAGACGAGGACAAGGCCGACTCTGATGCCEST: gi|86470502|gb|DY236872.1|DY236872
genomic: GATGCCGCCAAGGGTGGGGATGATGAGGATGATGACCTAGAGgtcagcattg ... tcggtctcagGATGAGGAAGACGATGAGAAGGCAGACGAGGACAAGGCCGACTCTGATGCC
EST: GATGCCGCCAAGGGTGGGGATGATGAGGATGATGACCTAGAG GATGAGGAAGACGATGAGAAGGCAGACGAGGACAAGGCCGACTCTGATGCCEST: gi|71442155|gb|DR823205.1|DR823205
genomic: GATGCCGCCAAGGGTGGGGATGATGAGGATGATGACCTAGAGgtcagcattg ... tcggtctcagGATGAGGAAGACGATGAGAAGGCAGACGAGGACAAGGCCGACTCTGATGCC
EST: GATGCCGCCAAGGGTGGGGATGATGAGGATGATGACCTAGAG GATGAGGAAGACGATGAGAAGGCAGACGAGGACAAGGCCGACTCTGATGCCEST: gi|37374548|gb|CF623645.1|CF623645
genomic: GATGCCGCCAAGGGTGGGGATGATGAGGATGATGACCTAGAGgtcagcattg ... tcggtctcagGATGAGGAAGACGATGAGAAGGCAGACGAGGACAAGGCCGACTCTGATGCC
EST: GATGCCGCCAAGGGTGGGGATGATGAGGATGATGACCTAGAG GATGAGGAAGACGATGAGAAGGCAGACGAGGACAAGGCCGACTCTGATGCCEST: gi|14190893|gb|BG833123.1|BG833123
genomic: GATGCCGCCAAGGGTGGGGATGATGAGGATGATGACCTAGAGgtcagcattg ... tcggtctcagGATGAGGAAGACGATGAGAAGGCAGACGAGGACAAGGCCGACTCTGATGCC
EST: GATGCCGCCAAGGGTGGGGATGATGAGGATGATGACCTAGAG GATGAGGAAGACGATGAGAAGGCAGACGAGGACAAGGCCGACTCTGEST: gi|84980095|gb|DW530444.1|DW530444
genomic: GATGCCGCCAAGGGTGGGGATGATGAGGATGATGACCTAGAGgtcagcattg ... tcggtctcagGATGAGGAAGACGATGAGAAGGCAGACGAGGACAAGGCCGACTCTG
EST: GATGCCGCCAAGGGTGGGGATGATGAGGATGATGACCTAGAG GATGAGGAAGACGATGAGAAGGCAGACGAGGACAAGGCCGACTCTGATGCCEST: gi|15590491|gb|BI675107.1|BI675107
genomic: GATGCCGCCAAGGGTGGGGATGATGAGGATGATGACCTAGAGgtcagcattg ... tcggtctcagGATGAGGAAGACGATGAGAAGGCAGACGAGGACAAGGCCGACTCTGATGCC
EST: GATGCCGCCAAGGGTGGGGATGATGAGGATGATGACCTAGAG GATGAGGAAGACGATGAGAAGGCAGACGAGGACAAGGCCGACTCTGATGCCEST: gi|166646465|gb|EG211254.1|EG211254
genomic: GATGCCGCCAAGGGTGGGGATGATGAGGATGATGACCTAGAGgtcagcattg ... tcggtctcagGATGAGGAAGACGATGAGAAGGCAGACGAGGACAAGGCCGACTCTGATGCC
EST: CGCCAAGGGTGGGGATGATGAGGATGATGACCTAGAG GATGAGGAAGACGATGAGAAGGCAGACGAGGACAAGGCCGACTCTGATGCCEST: gi|5268655|gb|AI770619.1|AI770619
genomic: CGCCAAGGGTGGGGATGATGAGGATGATGACCTAGAGgtcagcattg ... tcggtctcagGATGAGGAAGACGATGAGAAGGCAGACGAGGACAAGGCCGACTCTGATGCC
EST: GATGCCGCCAAGGGTGGGGATGATGAGGATGATGACCTAGAG GATGAGGAAGACGATGAGAAGGCAGACGAGGACCAGGCCGACTCTGATGCCEST: gi|33093443|gb|CF053437.1|CF053437
genomic: GATGCCGCCAAGGGTGGGGATGATGAGGATGATGACCTAGAGgtcagcattg ... tcggtctcagGATGAGGAAGACGATGAGAAGGCAGACGAGGACAAGGCCGACTCTGATGCC
EST: GATGCCGCCAAGGGTGGGGATGATGAGGATGATGACCTAGAG GATGAGGAAGACGATGAGAAGGCAGACGAGGACAAGGCCGACTCTGATGCCEST: gi|148937046|gb|EC881219.2|EC881219
genomic: GATGCCGCCAAGGGTGGGGATGATGAGGATGATGACCTAGAGgtcagcattg ... tcggtctcagGATGAGGAAGACGATGAGAAGGCAGACGAGGACAAGGCCGACTCTGATGCC
EST: GATGCCGCCAAGGGTGGGGATGATGAGGATGATGACCTAGAG GATGAGGAAGACGATGAGAAGGCAGACGAGGACAAGGCCGACTCTGATGCCEST: gi|211100469|gb|FL191950.1|FL191950
genomic: GATGCCGCCAAGGGTGGGGATGATGAGGATGATGACCTAGAGgtcagcattg ... tcggtctcagGATGAGGAAGACGATGAGAAGGCAGACGAGGACAAGGCCGACTCTGATGCC
EST: GATGCCGCCAAGGGTGGGGATGATGAGGATGATGACCTAGAG GATGAGGAAGACGATGAGAAGGCAGACGAGGACAAGGEST: gi|84980708|gb|DW531057.1|DW531057
genomic: GATGCCGCCAAGGGTGGGGATGATGAGGATGATGACCTAGAGgtcagcattg ... tcggtctcagGATGAGGAAGACGATGAGAAGGCAGACGAGGACAAGG
EST: GATGCCGCCAAGGGTGGGGATGATGAGGATGATGACCTAGAG GATGAGGAAGACGATGAGAAGGCAGACGAGGACAAGGCCGACTCTGATGCCEST: gi|29544799|gb|CB605407.1|CB605407
genomic: GATGCCGCCAAGGGTGGGGATGATGAGGATGATGACCTAGAGgtcagcattg ... tcggtctcagGATGAGGAAGACGATGAGAAGGCAGACGAGGACAAGGCCGACTCTGATGCC
EST: GATGCCGCCAAGGGTGGGGATGATGAGGATGATGACCTAGAG GATGAGGAAGACGATGAGAAGGCAGACGAGGACAAGGCCGACTCTGATGCCEST: gi|113615087|gb|DW779890.1|DW779890
genomic: GATGCCGCCAAGGGTGGGGATGATGAGGATGATGACCTAGAGgtcagcattg ... tcggtctcagGATGAGGAAGACGATGAGAAGGCAGACGAGGACAAGGCCGACTCTGATGCC
EST: ATGACCTAGAG GATGAGGAAGACGATGAGAAGGCAGACGAGGACAAGGCCGACTCTGATGCCEST: gi|37382092|gb|CF627969.1|CF627969
genomic: ATGACCTAGAGgtcagcattg ... tcggtctcagGATGAGGAAGACGATGAGAAGGCAGACGAGGACAAGGCCGACTCTGATGCC
EST: GATGCCGCCAAGGGTGGGGATGATGAGGATGATGACCTAGAG GATGAGGAAGACGATGAGAAGGCAGACGAGGACAAGGCCGACTCTGATGCCEST: gi|88750940|gb|DY535081.1|DY535081
genomic: GATGCCGCCAAGGGTGGGGATGATGAGGATGATGACCTAGAGgtcagcattg ... tcggtctcagGATGAGGAAGACGATGAGAAGGCAGACGAGGACAAGGCCGACTCTGATGCC
EST: GATGCCGCCAAGGGTGGGGATGATGAGGATGATGACCTAGAG GATGAGGAAGACGATGAGAAGGCAGACGAGGACAAGGCCGACTCTGATGCCEST: gi|71759740|gb|DR957677.1|DR957677
genomic: GATGCCGCCAAGGGTGGGGATGATGAGGATGATGACCTAGAGgtcagcattg ... tcggtctcagGATGAGGAAGACGATGAGAAGGCAGACGAGGACAAGGCCGACTCTGATGCC
EST: GATGCCGCCAAGGGTGGGGATGATGAGGATGATGACCTAGAG GATGAGGAAGACGATGAGAAGGCAGACGAGGACAAGGCCGACTCTGATGCCEST: gi|7162466|gb|AW520088.1|AW520088
genomic: GATGCCGCCAAGGGTGGGGATGATGAGGATGATGACCTAGAGgtcagcattg ... tcggtctcagGATGAGGAAGACGATGAGAAGGCAGACGAGGACAAGGCCGACTCTGATGCC
EST: GATGCCGCCAAGGGTGGGGATGATGAGGATGATGACCTAGAG GATGAGGAAGACGATGAGAAGGCAGACGAGGACAAGGCCGACTCTGATGCCEST: gi|148963936|gb|EE015057.2|EE015057
genomic: GATGCCGCCAAGGGTGGGGATGATGAGGATGATGACCTAGAGgtcagcattg ... tcggtctcagGATGAGGAAGACGATGAGAAGGCAGACGAGGACAAGGCCGACTCTGATGCC
EST: GATGCCGCCAAGGGTGGGGATGATGAGGATGATGACCTAGAG GATGAGGAAGACGATGAGAAGGCAGACGAGGACAAGGCCGACTCTGATGCCEST: gi|71432522|gb|DR813572.1|DR813572
genomic: GATGCCGCCAAGGGTGGGGATGATGAGGATGATGACCTAGAGgtcagcattg ... tcggtctcagGATGAGGAAGACGATGAGAAGGCAGACGAGGACAAGGCCGACTCTGATGCC
EST: GATGCCGCCAAGGGTGGGGATGATGAGGATGATGACCTAGAG GATGAGGAAGACGATGAGAAGGCAGACGAGGACAAGGCCGACTCTGATGCC
genomic: GATGCCGCCAAGGGTGGGGATGATGAGGATGATGACCTAGAGgtcagcattg ... tcggtctcagGATGAGGAAGACGATGAGAAGGCAGACGAGGACAAGGCCGACTCTGATGCC
tcatatatgcagctcaaatgatctaataaataaattgtacatgtatcggtctcagGATGAGGAAGACGATGAGAAGGCAGACGAGGACAAGGCCGACTCTGATGCCGAGGATGGCAAGGATTCTGATGATGAGAAGCAC
atctaat putative branch site (score: 6620)
aaatgatctaataaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagcattgcaccttcatattcttcatgggccattacgtttcatatatgcagctcaaatgatctaataaataaattgtacatgtatcggtctcagGATGAGGAAGACGATGAGAAGGCAGACGAGGACAAGGCCGACTCTGATGCCGAGGATGGCAAGGATTCTGATGATGAGAAGCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC