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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgactttaccattttcacagctatagtaacatagctgcagtgtgcacataacaggattttctgcgttttgaagtcaccatggttcttttgctttcaactgcagGACCTTGTCGGCTTAGTCATCTCAATACTGCTTCTTGCAGATTTCAGCTTAGTCTTGCTTACTTTCCTCCAACTATATTCATATTCTATGGTCGATGTTC

Basic information

species Zea mays
transcript GRMZM2G350818_T01
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G350818_T01 (Zea mays), 3'ss of exon 12
lower sequence: LOC_Os05g09360.1 (Oryza sativa), 3'ss of exon 17
gtgactttaccatttt-cacagctatagtaacatagctgca-------gtgtgcacataacaggattttctgcgttttgaagtcaccatggttcttttgctttcaactgcagGACCTTGTCGGCTTAGTCATCTCAATACTGCTTCTTGCAGATTTCAGCTTAGTCTTGCTTACTTTCCTCCAACTATATTCATATTCTATGGTCGATGTTC
|||||||  ||||||| |||||||||  | ||||   ||||       || ||   || |  |||| | |    | ||||| | |||| ||||||||| |||||  |||||||| ||||| || || || ||||| ||| ||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||| |||||||  
gtgactt--ccattttgcacagctatcctgacatcattgcaacccctagtttggttatgat-ggatctacacaatcttgaacttaccaaggttctttttctttc--ctgcagGATCTTGTTGGTTTGGTGATCTCTATATTGCTTCTTGCAGATTTCAGCTTAGTATTGCTTACTTTTCTCCAGCTATATTCATATTCTATGATCGATGTGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taacaggattttctgcgttttgaagtcaccatggttcttttgctttcaactgcagGACCTTGTCGGCTTAGTCATCTCAATACTGCTTCTTGCAGATTTCAGCTTAGTCTTGCTTACTTTCCTCCAACTATATTCATATTCTATGGTCGATGTTC
 acataac  putative branch site (score: 3)
                                  ttcttttgctttc  putative PPT
       attttct  TA-rich tract