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gtataactaaaatgtctactgtagactttgttgtcatgcatattctgcattcctattttgtcaacatgctcattacttctccaataacatcagtttgttttatctatgagcagCCCCCATCTGGGCCACCTGGAGCATCAGCAGGCTCAGCTCCCCAAACCTTAATTGGTAACTCTAGTTTTGGTGTTCCTCCACAGCAGCCTCACCAGCTCT
species | Zea mays |
transcript | GRMZM2G341732_T02 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TATTCAAGCTCACATG CCCCCATCTGGGCCACCTGGAGCATCAGCAGGCTCAGCTCCCCAAACCTTAEST: gi|78077120|gb|DV505554.1|DV505554
genomic: TATTCAAGCTCACATGgtataactaa ... ctatgagcagCCCCCATCTGGGCCACCTGGAGCATCAGCAGGCTCAGCTCCCCAAACCTTA
EST: CAAACCCTTTTGATCTTGGGAATGAGTCAGCTCATATTCAAGCTCACATG CCCCCATCTGGGCCACCTGGAGCATCEST: gi|149008599|gb|EE040781.2|EE040781
genomic: CAAACCCTTTTGATCTTGGGAATGAGTCAGCTCATATTCAAGCTCACATGgtataactaa ... ctatgagcagCCCCCATCTGGGCCACCTGGAGCATC
EST: AACCCTTTTGATCTTGGGAGGGAGTCAGCTCATATTCAAGCTCACATG CCCCCATCTGGGCCACCGGGAGCATCAGCAGGCTCAGCTCCCCAAACCTTAEST: gi|32919641|gb|CF024453.1|CF024453
genomic: AACCCTTTTGATCTTGGGAATGAGTCAGCTCATATTCAAGCTCACATGgtataactaa ... ctatgagcagCCCCCATCTGGGCCACCTGGAGCATCAGCAGGCTCAGCTCCCCAAACCTTA
EST: CAAACCCTTTTGATCTTGGGAATGAGTCAGCTCATATTCAAGCTCACATG CCCCCATCTGGGCCACCTGGAGCATCAGCAGGTTCAGCTCCCCAAACCTTAEST: gi|91056962|gb|EB167380.1|EB167380
genomic: CAAACCCTTTTGATCTTGGGAATGAGTCAGCTCATATTCAAGCTCACATGgtataactaa ... ctatgagcagCCCCCATCTGGGCCACCTGGAGCATCAGCAGGCTCAGCTCCCCAAACCTTA
EST: CAAACCCTTTTGATCTTGGGAATGAGTCAGCTCATATTCAAGCTCACATG CCCCCATCTGGGCCACCTGGAGCATCAGCAGGCTCAGCTCCCCAAACCTTAEST: gi|67019717|gb|CO448466.1|CO448466
genomic: CAAACCCTTTTGATCTTGGGAATGAGTCAGCTCATATTCAAGCTCACATGgtataactaa ... ctatgagcagCCCCCATCTGGGCCACCTGGAGCATCAGCAGGCTCAGCTCCCCAAACCTTA
EST: CAAACCCTTTTGATCTTGGGAATGAGTCAGCTCATATTCAAGCTCACATG CCCCCATCTGGGCCACCTGGAGCATCAGCAGGTTCAGCTCCCCAAACCTTA
genomic: CAAACCCTTTTGATCTTGGGAATGAGTCAGCTCATATTCAAGCTCACATGgtataactaa ... ctatgagcagCCCCCATCTGGGCCACCTGGAGCATCAGCAGGCTCAGCTCCCCAAACCTTA
tgtcaacatgctcattacttctccaataacatcagtttgttttatctatgagcagCCCCCATCTGGGCCACCTGGAGCATCAGCAGGCTCAGCTCCCCAAACCTTAATTGGTAACTCTAGTTTTGGTGTTCCTCCACAGCAGCCTCACCAGCTCT
caataac putative branch site (score: 2)
ttttatct putative PPT
tttgttttatctat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtataactaaaatgtctactgtagactttgttgtcatgcatattctgcattcctattttgtcaacatgctcattacttctccaataacatcagtttgttttatctatgagcagCCCCCATCTGGGCCACCTGGAGCATCAGCAGGCTCAGCTCCCCAAACCTTAATTGGTAACTCTAGTTTTGGTGTTCCTCCACAGCAGCCTCACCAGCTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC