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gtcaattttttttaatctttccaatttatatttgtttcctccactacccacgaattttcaccagtccttagtttttactcataataatgttctgttgcagAACACATATCAACAATACATGGCTGCTAGAGAATTGAAGAAGCAATCGTGGAGATTTCACCGGAGGTACAATACCTGGTTCCAGCGGCATGTGGAGCCAC
species | Zea mays |
transcript | GRMZM2G340749_T01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GCGACACATTAGCTACCGACATGCTATTCTTTGCGTTCTATTACCAGCAG AACACATATCAACAATACATGGCTGCTAGAGAATTGAAGAAGCAATCGTGGEST: gi|50331351|gb|CO526477.1|CO526477
genomic: GCGACACATTAGCTACCGACATGCTATTCTTTGCGTTCTATTACCAGCAGgtcaattttt ... tctgttgcagAACACATATCAACAATACATGGCTGCTAGAGAATTGAAGAAGCAATCGTGG
EST: GCGACACATTAGCTACCGACATGCTATTCTTTGCGTTCTATTACCAGCAG AACACATATCAACAATACATGGCTGCTAGAGAATTGAAGAAGCAATCGTGGEST: gi|67024274|gb|CO453023.1|CO453023
genomic: GCGACACATTAGCTACCGACATGCTATTCTTTGCGTTCTATTACCAGCAGgtcaattttt ... tctgttgcagAACACATATCAACAATACATGGCTGCTAGAGAATTGAAGAAGCAATCGTGG
EST: GCGACACATTAGCTACCGACATGCTATTCTTTGCGTTCTATTACCAGCAG AACACATATCAACAATACATGGCTGCTAGAGAATTGAAGAAGCAATCGTGGEST: gi|31359147|gb|CD443504.1|CD443504
genomic: GCGACACATTAGCTACCGACATGCTATTCTTTGCGTTCTATTACCAGCAGgtcaattttt ... tctgttgcagAACACATATCAACAATACATGGCTGCTAGAGAATTGAAGAAGCAATCGTGG
EST: GCGACACATTAGCTACCGACATGCTATTCTTTGCGTTCTATTACCAGCAG AACACATATCAACAATACATGGCTGCTAGAGAATTGAAGAAGCAATCGTGG
genomic: GCGACACATTAGCTACCGACATGCTATTCTTTGCGTTCTATTACCAGCAGgtcaattttt ... tctgttgcagAACACATATCAACAATACATGGCTGCTAGAGAATTGAAGAAGCAATCGTGG
acccacgaattttcaccagtccttagtttttactcataataatgttctgttgcagAACACATATCAACAATACATGGCTGCTAGAGAATTGAAGAAGCAATCGTGGAGATTTCACCGGAGGTACAATACCTGGTTCCAGCGGCATGTGGAGCCAC
ttctgtt CT-rich tract
ttagtttttactcata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcaattttttttaatctttccaatttatatttgtttcctccactacccacgaattttcaccagtccttagtttttactcataataatgttctgttgcagAACACATATCAACAATACATGGCTGCTAGAGAATTGAAGAAGCAATCGTGGAGATTTCACCGGAGGTACAATACCTGGTTCCAGCGGCATGTGGAGCCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG