1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtacctctcttctttcgctttcgcttctcagaaaacagaagcgtggcctttgtcaagacaaggacgcgcttattaatacaaccaaacatacaagctaagtagctaacctcaactgttcgttctgtgtggcagAAATGCTCGCCACAGATCAGCTCGACCACTGGGAATGGAATTCTATCGAGGCGGCGGCAGTTGCTTGCTCCAAGAACCTGGATCGGCTGAGGAGCTAGCT
species | Zea mays |
transcript | GRMZM2G302233_T01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GAACCCCTAGTGAAGTGGCTCTAGCCGCCTAACTAAACCGCGGCCTCCAG AAATGCTCGCCACAGATCAGCTCGACCACTGGGAATGGAATTCTATCGAGGEST: gi|60354248|gb|DN221221.1|DN221221
genomic: GAACCCCTAGTGAAGTGGCTCTAGCCGCCTAACTAAACCGCGGCCTCCAGgtacctctct ... tgtgtggcagAAATGCTCGCCACAGATCAGCTCGACCACTGGGAATGGAATTCTATCGAGG
EST: GAACCCCTAGTGAAGTGGCTCTAGCCGCCTAACTAAACCGCGGCCTCCAG AAATGCTCGCCACAGATCAGCTCGACCACTGGGAATGGAATTCTATCGAGGEST: gi|71305263|gb|DR788765.1|DR788765
genomic: GAACCCCTAGTGAAGTGGCTCTAGCCGCCTAACTAAACCGCGGCCTCCAGgtacctctct ... tgtgtggcagAAATGCTCGCCACAGATCAGCTCGACCACTGGGAATGGAATTCTATCGAGG
EST: GAACCCCTAGTGAAGTGGCTCTAGCCGCCTAACTAAACCGCGGCCTCCAG AAATGCTCGCCACAGATCAGCTCGACCACTGGGAATGGAATTCTATCGAGGEST: gi|113701875|gb|EE679379.1|EE679379
genomic: GAACCCCTAGTGAAGTGGCTCTAGCCGCCTAACTAAACCGCGGCCTCCAGgtacctctct ... tgtgtggcagAAATGCTCGCCACAGATCAGCTCGACCACTGGGAATGGAATTCTATCGAGG
EST: GAACCCCTAGCGAAGTGGTTCTAGCCGCCTAACTAAACCGCGGCCTCCAG AAATGCTCGCCACAGATCAGCTCGACCACTGGGAATGGAATTCTATATCGAEST: gi|60348406|gb|DN215379.1|DN215379
genomic: GAACCCCTAGTGAAGTGGCTCTAGCCGCCTAACTAAACCGCGGCCTCCAGgtacctctct ... tgtgtggcagAAATGCTCGCCACAGATCAGCTCGACCACTGGGAATGGAATTCTAT--CGA
EST: GAACCCCTAGTGAAGTGGCTCTAGCCGCCTAACTAAACCGCGGCCTCCAG AAATGCTCGCCACAGATCAGCTCGACCACTGGGAATGGAATTCTATCGAGGEST: gi|76290386|gb|DV029954.1|DV029954
genomic: GAACCCCTAGTGAAGTGGCTCTAGCCGCCTAACTAAACCGCGGCCTCCAGgtacctctct ... tgtgtggcagAAATGCTCGCCACAGATCAGCTCGACCACTGGGAATGGAATTCTATCGAGG
EST: GAACCCCTAGTGAAGTGGCTCTAGCCGCCTAACTAAACCGCGGCCTCCAG AAATGCTCGCCACAGATCAGCTCGACCACTGGGAATGGAATTCTATCGAGGEST: gi|211103389|gb|FL435546.1|FL435546
genomic: GAACCCCTAGTGAAGTGGCTCTAGCCGCCTAACTAAACCGCGGCCTCCAGgtacctctct ... tgtgtggcagAAATGCTCGCCACAGATCAGCTCGACCACTGGGAATGGAATTCTATCGAGG
EST: GAACCCCTAGTGAAGTGGCTCTAGCCGCCTAACTAAACCGCGGCCTCCAG AAATGCTCGCCACAGATCAGCTCGACCACTGGGAATGGAATTCTATCGAGG
genomic: GAACCCCTAGTGAAGTGGCTCTAGCCGCCTAACTAAACCGCGGCCTCCAGgtacctctct ... tgtgtggcagAAATGCTCGCCACAGATCAGCTCGACCACTGGGAATGGAATTCTATCGAGG
acaaccaaacatacaagctaagtagctaacctcaactgttcgttctgtgtggcagAAATGCTCGCCACAGATCAGCTCGACCACTGGGAATGGAATTCTATCGAGGCGGCGGCAGTTGCTTGCTCCAAGAACCTGGATCGGCTGAGGAGCTAGCT
agctaac putative branch site (score: 46)
ttcgttct putative PPT
aaacata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacctctcttctttcgctttcgcttctcagaaaacagaagcgtggcctttgtcaagacaaggacgcgcttattaatacaaccaaacatacaagctaagtagctaacctcaactgttcgttctgtgtggcagAAATGCTCGCCACAGATCAGCTCGACCACTGGGAATGGAATTCTATCGAGGCGGCGGCAGTTGCTTGCTCCAAGAACCTGGATCGGCTGAGGAGCTAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT