Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtgttcatcatgccattgattcttccagcgcctcatgtgaaaaactcagttactgaatttatttttgaattgcagGATTTTGTTGACATCAACCTCTGAAGTTTATGGTGATCCACTTGAGCATCCTCAAATTGAGGCCTACTGGGGCAATGTTAATCCGATTG

Basic information

species Zea mays
transcript GRMZM2G300412_T01
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G300412_T01 (Zea mays), 3'ss of exon 12
lower sequence: LOC_Os03g16980.4 (Oryza sativa), 3'ss of exon 6
gtcagtgttcatc--atgcc-attgattcttccagcgc--ctcatgtgaaaaactcagttactgaa---tttatttttgaattgcagGATTTTGTTGACATCAACCTCTGAAGTTTATGGTGATCCACTTGAGCATCCTCAAATTGAGGCCTACTGGGGCAATGTTAATCCGATTG
||  |||||  |   ||||  ||| | |  |||   ||  || ||| |||  |   | | |  | |   |||  | ||| | ||||||||||||||||| || |||||||||||||| |||||||| |||||||| |||||||  |||||||||||||| |||||||| || ||||
gttggtgtttttttaatgctgattaacttgtcctatgcaacttatgagaactatataatgaagggaggtttttatgttgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCCTCAAACAGAGGCCTACTGGGGAAATGTTAACCCAATTG

upper sequence: GRMZM2G300412_T01 (Zea mays), 3'ss of exon 12
lower sequence: Vv06s0004g04390.t01 (Vitis vinifera), 3'ss of exon 6
gtcagtgttcatcatgccattgattcttccagcgcctcatgtgaaaaactcagttactgaatttatttttgaatt--gcagGATTTTGTTGACATCAACCTCTGAAGTTTATGGTGATCCACTTGAGCATCCTCAAATTGAGGCCTACTGGGGCAATGTTAATCCGATTG
||  | | |     | |  || |||| |  | |        | ||   |||| ||  | || |||| ||    ||   |||||| ||| | |||||||| || ||||| ||||| ||||| ||||||||||| |||| ||||  ||| ||||| |||||||| || || |
gtttgggatttgacttcattttattcctttaaccaggatcataaatttctcaatttattaaattatgttaatgtttaacagGATATTGCTTACATCAACTTCAGAAGTATATGGAGATCCTCTTGAGCATCCCCAAACTGAGAGCTATTGGGGAAATGTTAACCCAATAG

upper sequence: GRMZM2G300412_T01 (Zea mays), 3'ss of exon 12
lower sequence: EFJ17446 (Selaginella moellendorffii), 3'ss of exon 5
gtcagtgttcatcatgccattgattcttccagcgcctcatgtgaaaaactcagttactgaatttatttttgaattgcagGATTTTGTTGACATCAACCTCTGAAGTTTATGGTGATCCACTTGAGCATCCTCAAATTGAGGCCTACTGGGGCAATGTTAATCCGATTG
                   || || || |   |   |||   ||  ||   |  ||       |  |       | ||||||| |  | || |||||||| ||||||||||| |||||||| |||||||| ||||  ||||  |||||||||||||| ||||| || |
------------------gttaat-ctcctctcttgtcacaagagcaagcaaactaactcgcattctcaaaccatacagGATTCTACTCACGTCAACCTCCGAAGTTTATGGGGATCCACTGGAGCATCCACAAAAGGAGGAATACTGGGGCAATGTGAATCCCATAG

upper sequence: GRMZM2G300412_T01 (Zea mays), 3'ss of exon 12
lower sequence: EFJ35029 (Selaginella moellendorffii), 3'ss of exon 5
gtcagtgttcatcatgccattgattcttccagcgcctcatgtgaaaaactcagttactgaatttatttttgaattgcagGATTTTGTTGACATCAACCTCTGAAGTTTATGGTGATCCACTTGAGCATCCTCAAATTGAGGCCTACTGGGGCAATGTTAATCCGATTG
                   || || || |   |   |||   ||  ||   |  ||       |  |       | |||||||||  | || |||||||| ||||||||||| |||||||| |||||||| ||||  ||||  |||||||||||||| ||||| || |
------------------gttaat-ctcctctcttgtcacaagagcaagcaaactaactcgcattctcaaaccatacagGATTTTACTCACGTCAACCTCCGAAGTTTATGGGGATCCACTGGAGCATCCACAAAAGGAGGAATACTGGGGCAATGTGAATCCCATAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttccagcgcctcatgtgaaaaactcagttactgaatttatttttgaattgcagGATTTTGTTGACATCAACCTCTGAAGTTTATGGTGATCCACTTGAGCATCCTCAAATTGAGGCCTACTGGGGCAATGTTAATCCGATTG
                                     tttattttt  CT-rich tract
                             ttactgaatttatttt  TA-rich tract