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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagataagttttctgtatgttttcagcatttatgttgaaggttagttgtaagaaccacttaacaactcctgcagAGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAG

Basic information

species Zea mays
transcript GRMZM2G181151_T01
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G181151_T02 (Zea mays), 3'ss of exon 12
lower sequence: LOC_Os06g37180.1 (Oryza sativa), 3'ss of exon 12
-------------gtaagataagttttctgta---tgttttca--gcatttatgttgaaggtta------------gttgtaagaaccacttaacaactcctgcagAGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAG
               || |||| |||    ||   || |||||   || |||  |   |   ||            ||| |||||||    ||| || || |||||||||||||||||||||| ||||| ||| |||||||||| ||||||||||| |||
gtgagattactcatcaatataaatttcacataaactggtttcataacagttacatgctacaataatttccatttgcgttctaagaactgtctaataattcttgcagAGTGCTATTGGTGAGGGTATGACCCGTCGAGACCATTCAGATGTGTCTAACCAG

upper sequence: GRMZM2G181151_T02 (Zea mays), 3'ss of exon 12
lower sequence: GLYMA20G24070.1 (Glycine max), 3'ss of exon 13
---------------------------------------gtaagataagttttctgtatgttttcagcatttatgttgaaggtta-gttgtaagaac-cac--ttaacaactcctgcagAGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAG
                                           ||||| | || | |   || | |     |     |  | | | | | |||     ||   ||    ||| ||||||||||||||||||||||| |||||  | || || ||||| |||||||| || |||
gtaaggataatcttgcttgtttgatatctaggtgctttaaagtgataaatattttctg-attcttaattaatgcaaagtggttcacgctctaatggtgcatcattggtcacttctgcagAGTGCTATTGGTGAGGGAATGACTAGAAGGGATCATTCTGATGTGTCCAACCAG

upper sequence: GRMZM2G181151_T02 (Zea mays), 3'ss of exon 12
lower sequence: AT1G76030.1 (Arabidopsis thaliana), 3'ss of exon 12
--------gtaagataagttttctgtatgttttcagcatt-tatgttgaaggttagttgtaagaaccacttaacaactcctgcagAGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAG----------------------------------------------
          ||    | |||  |  ||       ||||| ||| |  |    |  ||  | | |    ||  ||  ||    |||||||||| || ||||||||||| |||| ||||||||| |||||||| || |||                                              
gttagaattcaactccattttgattaatacccattgcattctatctccagatcttatta-acgtattgtttctca-ttctgttagAGTGCTATCGGCGAGGGCATGACTCGTAAAGACCATTCTGATGTGTCGAACCAGCTGTATGCAAATTATGCAATCGGGAAAGATGTTCAAGCGATGAAAG

upper sequence: GRMZM2G181151_T02 (Zea mays), 3'ss of exon 12
lower sequence: AT1G20260.1 (Arabidopsis thaliana), 3'ss of exon 12
-----------gtaagataagttttctgtatgttttca-gcatttatgttgaaggttagttgtaagaaccact-taacaactcctgcagAGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAG
            |  ||| |      | |   ||  || | ||| |     | | ||| || |  |    |   |     || || ||||||||||||||||| || ||||| || | ||||||||| |||||||| || |||
gtagccttgcaatttgattatacccttatggattcacatggattgaaacatacgattacttattcgcttaatcattgttccttctacagAGTGCTATTGGTGAAGGAATGACTCGCAAAGACCATTCTGATGTGTCCAACCAG

upper sequence: GRMZM2G181151_T02 (Zea mays), 3'ss of exon 12
lower sequence: AT4G38510.4 (Arabidopsis thaliana), 3'ss of exon 13
gtaagataagttttctgtatgttttcagcatttatgttgaaggttagttgtaa--gaaccacttaacaactcctgcagAGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAG
|||||    |     |  |   |   || ||  |     | | |   ||||||  | | || | |     |  |||||||||| ||||||||||| ||||| || || ||||| || ||||| |||||||| 
gtaagtgtgggggattcaaaaataatag-atgaagccaaatgatcgattgtaaacgtaacaatgactttgtattgcagAGTGCCATTGGTGAGGGTATGACTCGCAGGGACCACTCTGATGTTTCTAATCAA

upper sequence: GRMZM2G181151_T02 (Zea mays), 3'ss of exon 12
lower sequence: Vv03s0038g02760.t01 (Vitis vinifera), 3'ss of exon 12
-----------------gtaagataagttttctgtatgttttca----gcatttatgttgaagg--tta-gttgtaagaaccacttaacaactcctgcagAGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAG
                  ||||        || |    |||| |    | | || ||   | ||  |||  |  |   ||    ||   || ||||||||||||| ||||||||||| ||||| ||||| || ||| | ||||| || ||||||
gtaaccttgcttattgcataagccctaagctcggagattttttaaatggaagttctgacaaggggcttacatcatgtaaaatg-ttggtaattcctgcagAGTGCCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAATCAG

upper sequence: GRMZM2G181151_T02 (Zea mays), 3'ss of exon 12
lower sequence: Vv18s0001g01020.t01 (Vitis vinifera), 3'ss of exon 12
------------------------------------------------gtaa--gataagttttctgtatgttttcagcatttatgttg--aaggttagttgtaagaaccacttaacaactcctgcagAGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAG
                                                ||    |||  |     || ||| ||| | | || | |  |  ||   || |  | |  |    | |   | |  |||||||||| ||||||||||| ||||| ||| |||||||| | |||||||| || |||
gtaagacttttgcagtggagctgcccccttacacatagagagtacctagttgctgattggaaaggtgcatggttttaactttcaaggagttaaaagtaatctttattattggtgatggatt--tgcagAGTGCCATTGGTGAGGGAATGACTCGTCGAGACCATGCTGATGTGTCCAACCAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60355003|gb|DN221976.1|DN221976
EST:     ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAG                         AGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
genomic: ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAGgtaagataag ... actcctgcagAGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
EST: gi|16925493|gb|BM078561.1|BM078561
EST:     ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAG                         AGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
genomic: ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAGgtaagataag ... actcctgcagAGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
EST: gi|4646659|gb|AI491497.2|AI491497
EST:     CTATCAATGTCCTGCCATCTCTATTTCGATTGATGAAG                         AGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
genomic: CTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAGgtaagataag ... actcctgcagAGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
EST: gi|32945219|gb|CF050038.1|CF050038
EST:     ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAG                         AGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
genomic: ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAGgtaagataag ... actcctgcagAGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
EST: gi|211017023|gb|FL053488.1|FL053488
EST:     CGATTGATGAAG                         AGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
genomic: CGATTGATGAAGgtaagataag ... actcctgcagAGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
EST: gi|60343435|gb|DN210408.1|DN210408
EST:     ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAG                         AGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
genomic: ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAGgtaagataag ... actcctgcagAGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
EST: gi|211222466|gb|FL437622.1|FL437622
EST:     AGATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAG                         AGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
genomic: AGATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAGgtaagataag ... actcctgcagAGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
EST: gi|60352479|gb|DN219452.1|DN219452
EST:     ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAG                         AGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
genomic: ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAGgtaagataag ... actcctgcagAGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
EST: gi|6973468|gb|AW438162.1|AW438162
EST:     ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAG                         AGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
genomic: ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAGgtaagataag ... actcctgcagAGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
EST: gi|211122809|gb|FL454319.1|FL454319
EST:     TCGATTGATGAAG                         AGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
genomic: TCGATTGATGAAGgtaagataag ... actcctgcagAGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
EST: gi|67019767|gb|CO448516.1|CO448516
EST:     ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAG                         AGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
genomic: ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAGgtaagataag ... actcctgcagAGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
EST: gi|33101769|gb|CF061729.1|CF061729
EST:     ATTTATCCACCTATCAATGTCCTGCCATCTCTATCCCGATTGATGAAG                         AGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
genomic: ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAGgtaagataag ... actcctgcagAGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
EST: gi|194716931|gb|FK934090.1|FK934090
EST:     ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAG                         AGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
genomic: ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAGgtaagataag ... actcctgcagAGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
EST: gi|211222467|gb|FL437623.1|FL437623
EST:     ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAG                         AGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
genomic: ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAGgtaagataag ... actcctgcagAGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
EST: gi|60394888|gb|DN227757.1|DN227757
EST:     ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAG                         AGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
genomic: ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAGgtaagataag ... actcctgcagAGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
EST: gi|67015926|gb|CO444675.1|CO444675
EST:     ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAG                         AGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
genomic: ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAGgtaagataag ... actcctgcagAGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
EST: gi|33101431|gb|CF061391.1|CF061391
EST:     ATTTATCCACCTATCAATGCCCTGCCATCTCTATCTCGATTGATGAAG                         AGTGCTATTGGTGAGGGCATGACGCGTAGAGACCATTCGGATGTGTCTAAT
genomic: ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAGgtaagataag ... actcctgcagAGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
EST: gi|30307203|gb|CD001876.1|CD001876
EST:     AGATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAG                         AGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
genomic: AGATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAGgtaagataag ... actcctgcagAGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
EST: gi|213188201|gb|FM181912.1|FM181912
EST:     ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAG                         AGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
genomic: ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAGgtaagataag ... actcctgcagAGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
EST: gi|60395817|gb|DN228687.1|DN228687
EST:     ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAG                         AGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
genomic: ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAGgtaagataag ... actcctgcagAGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
EST: gi|24767815|gb|CA402951.1|CA402951
EST:     ATTTATCCACCTATCAATGTCCTGCCGTCTCTCTCTCGATTGATGAAG                         AGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCAGATGTGTCTAAT
genomic: ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAGgtaagataag ... actcctgcagAGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
EST: gi|6563648|gb|AW231375.1|AW231375
EST:     CTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAG                         AGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
genomic: CTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAGgtaagataag ... actcctgcagAGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
EST: gi|4646712|gb|AI491575.2|AI491575
EST:     CTATCTCGATTGATGAAG                         AGTGCTATTGGTGAGGGCATGGCACGTAGAGACCATTCGGATGTGTCTAAT
genomic: CTATCTCGATTGATGAAGgtaagataag ... actcctgcagAGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
EST: gi|32944615|gb|CF049434.1|CF049434
EST:     ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAG                         AGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
genomic: ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAGgtaagataag ... actcctgcagAGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
EST: gi|60396754|gb|DN229618.1|DN229618
EST:     ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAG                         AGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
genomic: ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAGgtaagataag ... actcctgcagAGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
EST: gi|37401251|gb|CF637988.1|CF637988
EST:     ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAG                         AGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
genomic: ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAGgtaagataag ... actcctgcagAGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
EST: gi|211019798|gb|FL053491.1|FL053491
EST:     CTATCTCGATTGATGAAG                         AGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
genomic: CTATCTCGATTGATGAAGgtaagataag ... actcctgcagAGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
EST: gi|33094143|gb|CF054137.1|CF054137
EST:     ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAG                         AGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
genomic: ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAGgtaagataag ... actcctgcagAGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
EST: gi|32933748|gb|CF038560.1|CF038560
EST:     ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAG                         AGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
genomic: ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAGgtaagataag ... actcctgcagAGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
EST: gi|32942169|gb|CF046988.1|CF046988
EST:     ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAG                         AGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
genomic: ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAGgtaagataag ... actcctgcagAGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
EST: gi|32931582|gb|CF036394.1|CF036394
EST:     ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAG                         AGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
genomic: ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAGgtaagataag ... actcctgcagAGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
EST: gi|211222468|gb|FL437624.1|FL437624
EST:     ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAG                         AGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT
genomic: ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAGgtaagataag ... actcctgcagAGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttcagcatttatgttgaaggttagttgtaagaaccacttaacaactcctgcagAGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAG
                                     acttaac  putative branch site (score: 3)
                                              ctcctgc  putative PPT
        atttatgtt  TA-rich tract